Sites on a Tree

 

Searching for up to 100 curated homologs for PP_2492 FitnessBrowser__Putida:PP_2492 (385 a.a.)

Found high-coverage hits (≥70%) to 61 curated proteins.

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

A7LGK0 1,3-propanediol dehydrogenase (EC 1.1.1.202) from Klebsiella pneumoniae (see paper)
    63% identity, 100% coverage of query (501 bits)

U6CL97 alcohol dehydrogenase (NADP+) (EC 1.1.1.2); alcohol dehydrogenase [NAD(P)+] (EC 1.1.1.71) from Pectobacterium atrosepticum (see paper)
    62% identity, 100% coverage of query (487 bits)

YqhD / b3011 NADPH-dependent aldehyde reductase YqhD (EC 1.1.1.2) from Escherichia coli K-12 substr. MG1655 (see 35 papers)
yqhD / Q46856 NADPH-dependent aldehyde reductase YqhD (EC 1.1.1.21; EC 1.1.1.2) from Escherichia coli (strain K12) (see 38 papers)
YQHD_ECOLI / Q46856 Alcohol dehydrogenase YqhD; EC 1.1.1.2 from Escherichia coli (strain K12) (see paper)
Q46856 alcohol dehydrogenase (NADP+) (EC 1.1.1.2) from Escherichia coli (see paper)
yqhD / RF|NP_417484 alcohol dehydrogenase yqhD; EC 1.1.1.- from Escherichia coli K12 (see 5 papers)
    61% identity, 100% coverage of query (483 bits)

1oj7A / Q46856 Structural genomics, unknown function crystal structure of e. Coli k-12 yqhd (see paper)
    61% identity, 99% coverage of query (480 bits)

1oj7B Structural genomics, unknown function crystal structure of e. Coli k-12 yqhd
    61% identity, 99% coverage of query (480 bits)

ADH2_GEOTN / A4ISB9 Long-chain-alcohol dehydrogenase 2; Alcohol dehydrogenase 2; ADH2; Fatty alcohol oxidoreductase 2; EC 1.1.1.192 from Geobacillus thermodenitrificans (strain NG80-2) (see paper)
A4ISB9 long-chain-alcohol dehydrogenase (EC 1.1.1.192); alcohol dehydrogenase (NADP+) (EC 1.1.1.2) from Geobacillus thermodenitrificans (see paper)
    41% identity, 100% coverage of query (285 bits)

7w9yA Crystal structure of bacillus subtilis yugj in complex with NADP and nickel (see paper)
    40% identity, 100% coverage of query (282 bits)

7w9zA Crystal structure of bacillus subtilis yugj in complex with NADP and nitrate
    41% identity, 93% coverage of query (280 bits)

ADH3_ENTH1 / Q24857 NADP-dependent alcohol dehydrogenase 3; ADH; EC 1.1.1.2 from Entamoeba histolytica (strain ATCC 30459 / HM-1:IMSS / ABRM) (see paper)
    38% identity, 99% coverage of query (276 bits)

bdhB / Q04945 BdhB from Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787) (see 5 papers)
    40% identity, 89% coverage of query (257 bits)

bdhA / Q04944 BdhA from Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787) (see 2 papers)
bdhA / GI|15026377 NADH-dependent butanol dehydrogenase A from Clostridium acetobutylicum ATCC 824 (see paper)
bdhA NADH-dependent butanol dehydrogenase A; EC 1.1.1.- from Clostridium acetobutylicum (see paper)
    38% identity, 93% coverage of query (257 bits)

B0KB53 alcohol dehydrogenase (NADP+) (EC 1.1.1.2) from Thermoanaerobacter pseudethanolicus (see paper)
    34% identity, 95% coverage of query (220 bits)

1vljB / Q9WZS7 Crystal structure of nadh-dependent butanol dehydrogenase a (tm0820) from thermotoga maritima at 1.78 a resolution
    34% identity, 93% coverage of query (212 bits)

7fjgA / Q8R612 Crystal structure of butanol dehydrogenase a (yqdh) in complex with partial nadh from fusobacterium nucleatum
    31% identity, 89% coverage of query (206 bits)

8i29A Crystal structure of butanol dehydrogenase a (yqdh) in complex with nadh from fusobacterium nucleatum
    31% identity, 89% coverage of query (206 bits)

Build an alignment

Build an alignment for PP_2492 and 15 homologs with ≥ 30% identity

Select sequences

Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

Or download the sequences

Change minimum %identity:

Additional hits (identity < 30%)

SQWF_CLOS9 / J1H1J3 Sulfoacetaldehyde reductase; EC 1.1.1.433 from Clostridium sp. (strain MSTE9)
    29% identity, 88% coverage of query (117 bits)

A0A1D3TV27 alcohol dehydrogenase (EC 1.1.1.1) from Anaerobium acetethylicum (see paper)
    27% identity, 88% coverage of query (110 bits)

3zdrA Structure of the alcohol dehydrogenase (adh) domain of a bifunctional adhe dehydrogenase from geobacillus thermoglucosidasius ncimb 11955 (see paper)
    23% identity, 92% coverage of query (100 bits)

B0K4A2 alcohol dehydrogenase (EC 1.1.1.1); acetaldehyde dehydrogenase (acetylating) (EC 1.2.1.10) from Thermoanaerobacter sp. X514 (see 2 papers)
    26% identity, 77% coverage of query (97.4 bits)

B0KBJ9 alcohol dehydrogenase (EC 1.1.1.1) from Thermoanaerobacter pseudethanolicus (see paper)
    26% identity, 77% coverage of query (97.4 bits)

Q9X022 1,3-propanediol dehydrogenase (EC 1.1.1.202) from Thermotoga maritima (see paper)
    26% identity, 76% coverage of query (97.4 bits)

1o2dA Crystal structure of alcohol dehydrogenase, iron-containing (tm0920) from thermotoga maritima at 1.30 a resolution
    26% identity, 76% coverage of query (97.4 bits)

1vhdA / Q9X022 Crystal structure of an iron containing alcohol dehydrogenase (see paper)
    26% identity, 76% coverage of query (97.1 bits)

A0A0H3W5K4 acetaldehyde dehydrogenase (acetylating) (EC 1.2.1.10) from Thermoanaerobacterium saccharolyticum (see paper)
I3VSF1 alcohol dehydrogenase (EC 1.1.1.1); L-lactate dehydrogenase (EC 1.1.1.27); acetaldehyde dehydrogenase (acetylating) (EC 1.2.1.10) from Thermoanaerobacterium saccharolyticum (see paper)
    25% identity, 78% coverage of query (96.3 bits)

adh1 / P13604 NADPH-dependent butanol dehydrogenase (EC 1.1.1.2) from Clostridium saccharobutylicum (see 3 papers)
adh1 / GB|AAA83520.1 NADPH-dependent butanol dehydrogenase; EC 1.1.1.1 from Clostridium saccharobutylicum (see paper)
    24% identity, 88% coverage of query (95.5 bits)

A0A0H3W5V0 alcohol dehydrogenase [NAD(P)+] (EC 1.1.1.71) from Thermoanaerobacterium saccharolyticum (see paper)
    24% identity, 78% coverage of query (93.6 bits)

Q0PH30 alcohol dehydrogenase (EC 1.1.1.1) from Thermoanaerobacter ethanolicus (see paper)
    25% identity, 77% coverage of query (93.2 bits)

PDUQ_CITFR / B1VB76 1-propanol dehydrogenase PduQ; Propanediol utilization protein PduQ; EC 1.1.-.- from Citrobacter freundii (see paper)
    26% identity, 97% coverage of query (92.0 bits)

hpfD / A0A374P995 3-hydroxypropane-1-sulfonate dehydrogenase from Hungatella hathewayi (see paper)
    25% identity, 92% coverage of query (90.5 bits)

pduQ / Q9XDN0 propanol dehydrogenase (EC 1.1.1.1) from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (see 2 papers)
PDUQ_SALTY / Q9XDN0 1-propanol dehydrogenase PduQ; Propanediol utilization protein PduQ; EC 1.1.-.- from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (see 3 papers)
    26% identity, 97% coverage of query (88.2 bits)

adh2 / GB|AAA81906.1 aldehyde-alcohol dehydrogenase 2; EC 1.1.1.1; EC 1.2.1.10 from Entamoeba histolytica (see paper)
AAA81906.1 alcohol dehydrogenase 2 from Entamoeba histolytica (see paper)
    25% identity, 74% coverage of query (87.8 bits)

ADH2_ENTH1 / Q24803 Aldehyde-alcohol dehydrogenase 2; EC 1.1.1.1; EC 1.2.1.10 from Entamoeba histolytica (strain ATCC 30459 / HM-1:IMSS / ABRM) (see 2 papers)
    25% identity, 74% coverage of query (87.8 bits)

ADH_THEBA / A0A0S1X9S7 Alcohol dehydrogenase; EC 1.1.1.1 from Thermococcus barophilus (see paper)
    27% identity, 86% coverage of query (87.4 bits)

A0A0Q2QQL1 alcohol dehydrogenase (NADP+) (EC 1.1.1.2) from Thermococcus thioreducens (see paper)
6c75A / A0A0Q2QQL1 Structure of iron containing alcohol dehydrogenase from thermococcus thioreducens in a monoclinic crystal form (see paper)
    29% identity, 85% coverage of query (86.3 bits)

6c75B Structure of iron containing alcohol dehydrogenase from thermococcus thioreducens in a monoclinic crystal form
    29% identity, 85% coverage of query (86.3 bits)

6jkoA / A0A0A7I0A5 Crystal structure of sulfoacetaldehyde reductase from bifidobacterium kashiwanohense (see paper)
    24% identity, 76% coverage of query (84.7 bits)

6jkpA Crystal structure of sulfoacetaldehyde reductase from bifidobacterium kashiwanohense in complex with NAD+
    24% identity, 76% coverage of query (84.7 bits)

pydE / A0A0A3J5T1 3-hydroxypropionate dehydrogenase (EC 1.1.1.59; EC 1.1.1.298) from Ureibacillus massiliensis 4400831 (see paper)
    25% identity, 75% coverage of query (84.3 bits)

adhB / P0DJA2 alcohol dehydrogenase II monomer (EC 1.1.1.1) from Zymomonas mobilis subsp. mobilis (strain ATCC 31821 / ZM4 / CP4) (see 8 papers)
ADH2_ZYMMO / P0DJA2 Alcohol dehydrogenase 2; Alcohol dehydrogenase II; ADH II; EC 1.1.1.1 from Zymomonas mobilis subsp. mobilis (strain ATCC 31821 / ZM4 / CP4) (see 2 papers)
P0DJA2 alcohol dehydrogenase (EC 1.1.1.1) from Zymomonas mobilis subsp. mobilis (see paper)
    26% identity, 83% coverage of query (83.6 bits)

3owoA / P0DJA2 Structures of iron-dependent alcohol dehydrogenase 2 from zymomonas mobilis zm4 with and without NAD cofactor (see paper)
    26% identity, 83% coverage of query (83.2 bits)

3ox4A Structures of iron-dependent alcohol dehydrogenase 2 from zymomonas mobilis zm4 complexed with NAD cofactor
    26% identity, 83% coverage of query (83.2 bits)

4HBDH_CUPNE / Q59104 4-hydroxybutyrate dehydrogenase; 4HbD; Gamma-hydroxybutyrate dehydrogenase; GHBDH; EC 1.1.1.61 from Cupriavidus necator (Alcaligenes eutrophus) (Ralstonia eutropha) (see 2 papers)
Q59104 4-hydroxybutyrate dehydrogenase (EC 1.1.1.61) from Cupriavidus necator (see paper)
gbd / PRF|2104199G 4-hydroxybutyrate dehydrogenase; EC 1.1.1.61 from Cupriavidus necator (see paper)
    27% identity, 84% coverage of query (81.3 bits)

YiaY / b3589 L-threonine dehydrogenase (EC 1.1.1.103) from Escherichia coli K-12 substr. MG1655 (see 6 papers)
yiaY / P37686 L-threonine dehydrogenase (EC 1.1.1.103) from Escherichia coli (strain K12) (see 5 papers)
    23% identity, 77% coverage of query (81.3 bits)

ADHE_STRP2 / A0A0H2ZM56 Aldehyde-alcohol dehydrogenase; EC 1.1.1.1; EC 1.2.1.3 from Streptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466) (see paper)
    25% identity, 77% coverage of query (80.5 bits)

ADHE_STRPN / A0A0H2URT2 Aldehyde-alcohol dehydrogenase; EC 1.1.1.1; EC 1.2.1.3 from Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4) (see paper)
    25% identity, 77% coverage of query (80.5 bits)

B1HX72 methanol dehydrogenase (EC 1.1.1.244) from Lysinibacillus sphaericus (see paper)
    27% identity, 73% coverage of query (80.1 bits)

BT3767 L-lactaldehyde reductase FucO (EC 1.1.1.77) from Bacteroides thetaiotaomicron VPI-5482
    24% identity, 76% coverage of query (78.2 bits)

5yvmA / A0A133UP32 Crystal structure of the archaeal halo-thermophilic red sea brine pool alcohol dehydrogenase adh/d1 bound to nzq (see paper)
    27% identity, 73% coverage of query (74.7 bits)

5yvrA Crystal structure of the h277a mutant of adh/d1, an archaeal halo- thermophilic red sea brine pool alcohol dehydrogenase
    26% identity, 74% coverage of query (74.3 bits)

6scgA Structure of adhe form 1
    25% identity, 74% coverage of query (71.2 bits)

3bfjA / Q7WRJ3 Crystal structure analysis of 1,3-propanediol oxidoreductase (see paper)
    26% identity, 88% coverage of query (69.7 bits)

7bvpA / P0A9Q7 Adhe spirosome in extended conformation (see paper)
    25% identity, 74% coverage of query (65.5 bits)

6tqmA Escherichia coli adhe structure in its compact conformation
    25% identity, 74% coverage of query (65.5 bits)

AdhE / b1241 fused acetaldehyde-CoA dehydrogenase and iron-dependent alcohol dehydrogenasealdehyde/alcohol dehydrogenase AdhE (EC 1.1.1.1; EC 1.2.1.10) from Escherichia coli K-12 substr. MG1655 (see 62 papers)
adhE / P0A9Q7 fused acetaldehyde-CoA dehydrogenase and iron-dependent alcohol dehydrogenasealdehyde/alcohol dehydrogenase AdhE (EC 1.1.1.1; EC 1.2.1.10) from Escherichia coli (strain K12) (see 64 papers)
ADHE_ECOLI / P0A9Q7 Bifunctional aldehyde-alcohol dehydrogenase AdhE; Alcohol dehydrogenase E; EC 1.2.1.10; EC 1.1.1.1 from Escherichia coli (strain K12) (see 13 papers)
ADHE_ECO57 / P0A9Q8 Bifunctional aldehyde-alcohol dehydrogenase AdhE; Alcohol dehydrogenase E; EC 1.2.1.10; EC 1.1.1.1 from Escherichia coli O157:H7 (see 2 papers)
P0A9Q7 alcohol dehydrogenase (EC 1.1.1.1); acetaldehyde dehydrogenase (acetylating) (EC 1.2.1.10) from Escherichia coli (see paper)
adhE / MB|P0A9Q7 aldehyde-alcohol dehydrogenase; EC 1.1.1.1; EC 1.2.1.10 from Escherichia coli K12 (see 12 papers)
    25% identity, 74% coverage of query (65.1 bits)

7qlqAAA Lactaldehyde reductase
    25% identity, 73% coverage of query (64.3 bits)

7qlgAAA Lactaldehyde reductase
    25% identity, 73% coverage of query (63.9 bits)

1rrmA Crystal structure of lactaldehyde reductase
    24% identity, 73% coverage of query (60.5 bits)

2bi4A Lactaldehyde:1,2-propanediol oxidoreductase of escherichia coli
    24% identity, 73% coverage of query (60.5 bits)

FucO / b2799 L-1,2-propanediol oxidoreductase (EC 1.1.1.77) from Escherichia coli K-12 substr. MG1655 (see 22 papers)
fucO / P0A9S1 L-1,2-propanediol oxidoreductase (EC 1.1.1.77) from Escherichia coli (strain K12) (see 23 papers)
FUCO_ECOLI / P0A9S1 Lactaldehyde reductase; Propanediol oxidoreductase; EC 1.1.1.77 from Escherichia coli (strain K12) (see paper)
    24% identity, 73% coverage of query (60.5 bits)

5br4A / P0A9S1 E. Coli lactaldehyde reductase (fuco) m185c mutant (see paper)
    24% identity, 73% coverage of query (59.7 bits)

3jzdA / Q46TQ1 Crystal structure of putative alcohol dehedrogenase (yp_298327.1) from ralstonia eutropha jmp134 at 2.10 a resolution
    27% identity, 73% coverage of query (49.3 bits)

Or start over

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory