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Searching for up to 100 curated homologs for PP_2514 FitnessBrowser__Putida:PP_2514 (238 a.a.)

Found high-coverage hits (≥70%) to 6 curated proteins.

Removed hits that are identical to the query, leaving 5

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

HMGA_PSEP1 / A5W059 4-hydroxy-4-methyl-2-oxoglutarate aldolase/4-carboxy-4-hydroxy-2-oxoadipate aldolase; HMG/CHA aldolase; Oxaloacetate decarboxylase; OAA decarboxylase; EC 4.1.3.17; EC 4.1.1.112 from Pseudomonas putida (strain ATCC 700007 / DSM 6899 / BCRC 17059 / F1) (see 2 papers)
A5W059 4-hydroxy-4-methyl-2-oxoglutarate aldolase (EC 4.1.3.17) from Pseudomonas putida (see paper)
    81% identity, 100% coverage of query (360 bits)

3nojA / A5W059 The structure of hmg/cha aldolase from the protocatechuate degradation pathway of pseudomonas putida (see paper)
    81% identity, 98% coverage of query (354 bits)

LIGK_SPHSK / G2IQQ8 4-carboxy-4-hydroxy-2-oxoadipate aldolase; CHA aldolase; Oxaloacetate decarboxylase; OAA decarboxylase; EC 4.1.3.17; EC 4.1.1.112 from Sphingobium sp. (strain NBRC 103272 / SYK-6) (see 2 papers)
ligK / BAB88738.1 4-carboxy-4-hydroxy-2-oxoadipate aldolase from Sphingomonas paucimobilis (see 5 papers)
    62% identity, 93% coverage of query (274 bits)

pmdF / Q93PS8 HMG aldolase monomer (EC 4.1.3.17) from Comamonas testosteroni (see paper)
    59% identity, 94% coverage of query (256 bits)

proA / Q9AQI0 4-oxalocitramalate aldolase subunit (EC 4.1.1.112; EC 4.1.3.17) from Pseudomonas straminea (see 3 papers)
HMGA_PSEOC / Q9AQI0 4-hydroxy-4-methyl-2-oxoglutarate aldolase/4-carboxy-4-hydroxy-2-oxoadipate aldolase; HMG/CHA aldolase; 4-hydroxy-2-oxoglutarate aldolase; Oxaloacetate decarboxylase; OAA decarboxylase; EC 4.1.3.16; EC 4.1.3.17; EC 4.1.1.112 from Pseudomonas straminea (see 4 papers)
proA / BAB21456.3 4-Hydroxy-4-methyl-2-oxoglutarate aldolase from Pseudomonas straminea (see 2 papers)
    58% identity, 94% coverage of query (255 bits)

Build an alignment

Build an alignment for PP_2514 and 5 homologs with ≥ 30% identity

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by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory