Sites on a Tree

 

Searching for up to 100 curated homologs for PP_3277 FitnessBrowser__Putida:PP_3277 (93 a.a.)

Found high-coverage hits (≥70%) to 3 curated proteins.

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

paaB / Q845J5 ring 1,2-phenylacetyl-CoA epoxidase PaaB subunit (EC 1.14.13.149) from Pseudomonas sp. Y2 (see paper)
    90% identity, 100% coverage of query (176 bits)

YnbF / b1389 phenylacetyl-CoA 1,2-epoxidase subunit B (EC 1.14.13.149) from Escherichia coli K-12 substr. MG1655 (see 2 papers)
paaB / P76078 phenylacetyl-CoA 1,2-epoxidase subunit B (EC 1.14.13.149) from Escherichia coli (strain K12) (see paper)
PAAB_ECOLI / P76078 1,2-phenylacetyl-CoA epoxidase, subunit B; 1,2-phenylacetyl-CoA monooxygenase, subunit B from Escherichia coli (strain K12) (see 5 papers)
    61% identity, 97% coverage of query (125 bits)

antI / A3KI27 anthraniloyl-[acp] 1,2-epoxidase subunit I from Streptomyces ambofaciens (strain ATCC 23877 / 3486 / DSM 40053 / JCM 4204 / NBRC 12836 / NRRL B-2516) (see 2 papers)
    53% identity, 84% coverage of query (76.3 bits)

Build an alignment

Build an alignment for PP_3277 and 3 homologs with ≥ 30% identity

Select sequences

Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

Or download the sequences

Change minimum %identity:

No additional hits (below 30% identity) were found

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by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory