Searching for up to 100 curated homologs for PP_3940 FitnessBrowser__Putida:PP_3940 (437 a.a.)
Found high-coverage hits (≥70%) to 42 curated proteins.
Removed hits that are identical to the query, leaving 41
You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.
ABAQ_ACIBT / P0DPR4 Quinolone resistance transporter from Acinetobacter baumannii (strain ATCC 17978 / CIP 53.77 / LMG 1025 / NCDC KC755 / 5377) (see 2 papers)
39% identity, 96% coverage of query (302 bits)
TC 2.A.1.14.8 / Q9RPP3 Phthalate porter from Burkholderia cepacia (Pseudomonas cepacia) (see paper)
38% identity, 94% coverage of query (298 bits)
PS417_07265 2-deoxy-D-ribonate transporter 1 from Pseudomonas simiae WCS417
37% identity, 91% coverage of query (240 bits)
BWI76_RS23715 2-deoxy-D-ribonate transporter 1 from Klebsiella michiganensis M5al
33% identity, 95% coverage of query (238 bits)
BPHYT_RS04765 2-deoxy-D-ribonate transporter from Burkholderia phytofirmans PsJN
37% identity, 91% coverage of query (233 bits)
YfaV / b2246 putative transporter YfaV from Escherichia coli K-12 substr. MG1655 (see 4 papers)
TC 2.A.1.14.35 / P76470 Inner membrane transport protein RhmT from Escherichia coli (strain K12) (see 4 papers)
35% identity, 96% coverage of query (231 bits)
H281DRAFT_00642 2-deoxy-D-ribonate transporter from Paraburkholderia bryophila 376MFSha3.1
35% identity, 93% coverage of query (228 bits)
CH_124128 MFS transporter from Magnaporthe grisea 70-15 (see paper)
32% identity, 80% coverage of query (177 bits)
Build an alignment for PP_3940 and 8 homologs with ≥ 30% identity
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CH_124132 transporter of Nicotinic Acid from Magnaporthe grisea 70-15 (see paper)
29% identity, 88% coverage of query (162 bits)
CH_124318 MFS transporter from Magnaporthe grisea 70-15 (see 2 papers)
30% identity, 81% coverage of query (157 bits)
CH_124029 high-affinity nicotinic acid transporter from Magnaporthe grisea 70-15 (see paper)
31% identity, 87% coverage of query (153 bits)
orf19.3232 putative transporter from Candida albicans (see paper)
30% identity, 72% coverage of query (150 bits)
CH_124317 phthalate transporter from Magnaporthe grisea 70-15 (see paper)
29% identity, 86% coverage of query (149 bits)
CH_124319 high-affinity nicotinic acid transporter from Magnaporthe grisea 70-15 (see paper)
28% identity, 90% coverage of query (141 bits)
HXNP_EMENI / C8VJW1 Major facilitator-type transporter hxnP; Nicotinate catabolism cluster protein hxnP from Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (Aspergillus nidulans) (see paper)
29% identity, 90% coverage of query (132 bits)
TNA1 putative nicotinic acid transporter from Candida albicans (see paper)
25% identity, 76% coverage of query (122 bits)
YIZG_SCHPO / Q9US44 Uncharacterized transporter C1002.16c from Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast) (see paper)
31% identity, 72% coverage of query (122 bits)
CH_124204 putative monocarboxylate exporter from Magnaporthe grisea 70-15 (see paper)
27% identity, 86% coverage of query (119 bits)
YHDC_SCHPO / Q9P6J0 Uncharacterized transporter C1683.12 from Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast) (see paper)
26% identity, 91% coverage of query (117 bits)
YFZ4_SCHPO / Q9US37 Uncharacterized transporter C1039.04 from Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast) (see paper)
28% identity, 72% coverage of query (109 bits)
CH_124323 high-affinity nicotinic acid transporter from Magnaporthe grisea 70-15 (see 2 papers)
25% identity, 76% coverage of query (104 bits)
LIZ1_SCHPO / O43000 Pantothenate transporter liz1 from Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast) (see 2 papers)
TC 2.A.1.14.17 / O43000 Pantothenate:H+ symporter, Liz1 (mutants cause abnormal mitosis due to a defect in ribonucleotide reductase) from Schizosaccharomyces pombe (Fission yeast) (see 3 papers)
liz1 / RF|NP_596430.1 pantothenate transporter liz1 from Schizosaccharomyces pombe (see 4 papers)
26% identity, 71% coverage of query (100 bits)
SAUU_CUPNH / Q0K843 Probable sulfoacetate transporter SauU from Cupriavidus necator (strain ATCC 17699 / DSM 428 / KCTC 22496 / NCIMB 10442 / H16 / Stanier 337) (Ralstonia eutropha) (see paper)
23% identity, 86% coverage of query (91.7 bits)
CH_124130 conserved hypothetical protein from Magnaporthe grisea 70-15 (see paper)
26% identity, 70% coverage of query (85.9 bits)
TC 2.A.1.14.38 / P40445 Transporter YIL166c (Hellborg et al. 2008) of 542 aas and 12 TMSs. May transport inorganic sulfur-containing compounds such as sulfate, sulfite, thiosulfate and sulfonates from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (see 3 papers)
24% identity, 73% coverage of query (85.5 bits)
FEN2_YEAST / P25621 Pantothenate transporter FEN2; Fenpropimorph resistance protein 2 from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) (see 3 papers)
TC 2.A.1.14.18 / P25621 Pantothenate:H+ symporter, Fen2 from Saccharomyces cerevisiae (Baker's yeast) (see 7 papers)
FEN2 / RF|NP_009957.1 pantothenate transporter FEN2 from Saccharomyces cerevisiae
26% identity, 88% coverage of query (82.0 bits)
GUDP_BACSU / P42237 Probable galactarate/D-glucarate transporter GudP from Bacillus subtilis (strain 168) (see paper)
TC 2.A.1.14.1 / P42237 Glucarate porter from Bacillus subtilis (see 3 papers)
25% identity, 95% coverage of query (82.0 bits)
CH_124316 allantoate permease from Magnaporthe grisea 70-15 (see paper)
24% identity, 89% coverage of query (81.3 bits)
PS417_04205 D-galacturonate transporter (MFS superfamily) from Pseudomonas simiae WCS417
24% identity, 91% coverage of query (80.9 bits)
TC 2.A.1.14.11 / P53322 Plasma membrane, high affinity nicotinate permease, Tna1 from Saccharomyces cerevisiae (Baker's yeast) (see 5 papers)
TNA1 / RF|NP_011776.1 high-affinity nicotinic acid transporter from Saccharomyces cerevisiae
25% identity, 73% coverage of query (79.7 bits)
P53322 High-affinity nicotinic acid transporter; Nicotinic acid permease from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
25% identity, 73% coverage of query (79.7 bits)
GarP / b3127 galactarate/D-glucarate transporter GarP from Escherichia coli K-12 substr. MG1655 (see 6 papers)
garP / P0AA80 galactarate/D-glucarate transporter GarP from Escherichia coli (strain K12) (see 5 papers)
GARP_ECOLI / P0AA80 Probable galactarate/D-glucarate transporter GarP from Escherichia coli (strain K12) (see 2 papers)
21% identity, 95% coverage of query (75.9 bits)
TC 2.A.1.14.14 / Q8FDB7 Probable D-galactarate (glucarate?):H+ symporter, GarP or YhaU from Escherichia coli O6 (see paper)
21% identity, 95% coverage of query (75.9 bits)
THI73_YEAST / Q07904 Thiamine pathway transporter THI73 from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) (see 3 papers)
TC 2.A.1.14.36 / Q07904 Thiamine pathway transporter THI73 from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (see 5 papers)
24% identity, 72% coverage of query (72.4 bits)
GALT_PSEPU / E8ZB61 Gallate transporter; Gallate permease from Pseudomonas putida (Arthrobacter siderocapsulatus) (see paper)
galT / CBJ94499.1 gallic acid permease from Pseudomonas putida (see paper)
26% identity, 82% coverage of query (70.1 bits)
MHBT_KLEOX / Q5EXK5 3-hydroxybenzoate transporter MhbT from Klebsiella oxytoca (see paper)
24% identity, 80% coverage of query (64.7 bits)
6e9nA / J7QAK3 E. Coli d-galactonate:proton symporter in the inward open form (see paper)
23% identity, 72% coverage of query (62.8 bits)
YidT / b3691 D-galactonate:H+ symporter from Escherichia coli K-12 substr. MG1655 (see 9 papers)
dgoT / P0AA76 D-galactonate:H+ symporter from Escherichia coli (strain K12) (see 11 papers)
DGOT_ECOLI / P0AA76 D-galactonate transporter; D-galactonate/H(+) symporter from Escherichia coli (strain K12) (see 4 papers)
TC 2.A.1.14.7 / P0AA76 Galactonate transporter from Escherichia coli (see 4 papers)
22% identity, 72% coverage of query (59.7 bits)
6e9oA E. Coli d-galactonate:proton symporter mutant e133q in the outward substrate-bound form
22% identity, 72% coverage of query (52.8 bits)
PCAK_PSEPU / Q51955 4-hydroxybenzoate transporter PcaK from Pseudomonas putida (Arthrobacter siderocapsulatus) (see 3 papers)
TC 2.A.1.15.1 / Q51955 4-Hydroxybenzoate/protocatechuate porter from Pseudomonas putida (see paper)
pcaK / AAA85137.1 PcaK from Pseudomonas putida (see paper)
21% identity, 82% coverage of query (51.6 bits)
Q03567 Uncharacterized transporter slc-17.2 from Caenorhabditis elegans
21% identity, 81% coverage of query (43.5 bits)
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Lawrence Berkeley National Laboratory