Sites on a Tree

 

Searching for up to 100 curated homologs for PP_3954 FitnessBrowser__Putida:PP_3954 (316 a.a.)

Found high-coverage hits (≥70%) to 4 curated proteins.

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

Psest_0085 alpha-ketoglutarate TRAP transporter, solute receptor component from Pseudomonas stutzeri RCH2
    76% identity, 92% coverage of query (449 bits)

1us4A / P83817 Putative glur0 ligand binding core with l-glutamate (see paper)
    36% identity, 93% coverage of query (193 bits)

Build an alignment

Build an alignment for PP_3954 and 2 homologs with ≥ 30% identity

Select sequences

Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

Or download the sequences

Change minimum %identity:

Additional hits (identity < 30%)

HP15_722 TRAP transporter for fumarate, succinate, L-malate, and 2-oxoglutarate, solute receptor component from Marinobacter adhaerens HP15
    25% identity, 97% coverage of query (92.0 bits)

Dshi_1195 TRAP transporter for fumarate, succinate, L-malate, and 2-oxoglutarate, solute receptor component from Dinoroseobacter shibae DFL-12
    22% identity, 98% coverage of query (64.3 bits)

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by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory