Sites on a Tree

 

Searching for up to 100 curated homologs for PP_3955 FitnessBrowser__Putida:PP_3955 (675 a.a.)

Found high-coverage hits (≥70%) to 3 curated proteins.

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

Psest_0084 alpha-ketoglutarate TRAP transporter, 4TM/12TM components from Pseudomonas stutzeri RCH2
    77% identity, 99% coverage of query (984 bits)

HP15_723 TRAP transporter for fumarate, succinate, L-malate, and 2-oxoglutarate, fused 4TM/12TM components from Marinobacter adhaerens HP15
    39% identity, 71% coverage of query (299 bits)

Dshi_1194 TRAP transporter for fumarate, succinate, L-malate, and 2-oxoglutarate, fused 4TM/12TM components from Dinoroseobacter shibae DFL-12
    38% identity, 77% coverage of query (296 bits)

Build an alignment

Build an alignment for PP_3955 and 3 homologs with ≥ 30% identity

Select sequences

Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

Or download the sequences

Change minimum %identity:

No additional hits (below 30% identity) were found

Or start over

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory