Searching for up to 100 curated homologs for PP_4116 FitnessBrowser__Putida:PP_4116 (441 a.a.)

Found high-coverage hits (≥70%) to 39 curated proteins.

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

Pf1N1B4_4042 Isocitrate lyase (EC 4.1.3.1) from Pseudomonas fluorescens FW300-N1B4
    95% identity, 100% coverage of query (886 bits)

Sama_2380 Isocitrate lyase (EC 4.1.3.1) from Shewanella amazonensis SB2B
    80% identity, 100% coverage of query (721 bits)

Shew_1276 Isocitrate lyase (EC 4.1.3.1) from Shewanella loihica PV-4
    78% identity, 99% coverage of query (714 bits)

SO1484 Isocitrate lyase (EC 4.1.3.1) from Shewanella oneidensis MR-1
    78% identity, 99% coverage of query (709 bits)

Icl / b4015 isocitrate lyase (EC 4.1.3.1) from Escherichia coli K-12 substr. MG1655 (see paper)
aceA / P0A9G6 isocitrate lyase (EC 4.1.3.1) from Escherichia coli (strain K12) (see 25 papers)
ACEA_ECOLI / P0A9G6 Isocitrate lyase; ICL; Isocitrase; Isocitratase; EC 4.1.3.1 from Escherichia coli (strain K12) (see 7 papers)
    72% identity, 99% coverage of query (660 bits)

BWI76_RS01665 Isocitrate lyase (EC 4.1.3.1) from Klebsiella michiganensis M5al
    71% identity, 99% coverage of query (649 bits)

Ac3H11_2831 Isocitrate lyase (EC 4.1.3.1) from Acidovorax sp. GW101-3H11
    70% identity, 100% coverage of query (649 bits)

1igwC / P0A9G6 Crystal structure of the isocitrate lyase from the a219c mutant of escherichia coli (see paper)
    71% identity, 95% coverage of query (629 bits)

6lrtA / A9WDE7 Crystal structure of isocitrate lyase (caur_3889) from chloroflexus aurantiacus in complex with isocitrate and manganese ion
    66% identity, 99% coverage of query (583 bits)

1igwA / P0A9G6 Crystal structure of the isocitrate lyase from the a219c mutant of escherichia coli (see paper)
    67% identity, 95% coverage of query (574 bits)

7cmyC / Q81GQ9 Isocitrate lyase from bacillus cereus atcc 14579 in complex with magnessium ion, glyoxylate, and succinate
    63% identity, 99% coverage of query (570 bits)

icl / P9WKK7 isocitrate lyase subunit (EC 4.1.3.1) from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) (see paper)
ACEA1_MYCTE / H8EVV4 Isocitrate lyase 1; ICL1; Isocitrase; Isocitratase; Methylisocitrate lyase; MICA; EC 4.1.3.1; EC 4.1.3.30 from Mycobacterium tuberculosis (strain ATCC 35801 / TMC 107 / Erdman) (see paper)
ACEA1_MYCBO / P0A5H4 Isocitrate lyase 1; ICL1; Isocitrase; Isocitratase; EC 4.1.3.1 from Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) (see paper)
ACEA1_MYCTO / P9WKK6 Isocitrate lyase 1; ICL1; Isocitrase; Isocitratase; Methylisocitrate lyase; MICA; EC 4.1.3.1; EC 4.1.3.30 from Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) (see 3 papers)
ACEA_MYCTU / P9WKK7 Isocitrate lyase; ICL; Isocitrase; Isocitratase; EC 4.1.3.1 from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) (see 7 papers)
P9WKK7 isocitrate lyase (EC 4.1.3.1) from Mycobacterium tuberculosis (see 4 papers)
    63% identity, 98% coverage of query (559 bits)

Q8RPZ0 isocitrate lyase (EC 4.1.3.1) from Streptomyces clavuligerus (see paper)
    64% identity, 98% coverage of query (557 bits)

6c4aA / P9WKK7 Crystal structure of 3-nitropropionate modified isocitrate lyase from mycobacterium tuberculosis with pyruvate (see paper)
    63% identity, 97% coverage of query (556 bits)

6xppA Crystal structure of itaconate modified mycobaterium tuberculosis isocitrate lyase
    63% identity, 97% coverage of query (556 bits)

7rb1A Isocitrate lyase-1 from mycobacterium tuberculosis covalently modified by 5-descarboxy-5-nitro-d-isocitric acid
    63% identity, 97% coverage of query (556 bits)

6wsiA Intact cis-2,3-epoxysuccinic acid bound to isocitrate lyase-1 from mycobacterium tuberculosis
    63% identity, 97% coverage of query (556 bits)

6vb9A Covalent adduct of cis-2,3-epoxysuccinic acid with isocitrate lyase-1 from mycobacterium tuberculosis
    63% identity, 97% coverage of query (556 bits)

5dqlA Crystal structure of 2-vinyl glyoxylate modified isocitrate lyase from mycobacterium tuberculosis
    63% identity, 97% coverage of query (556 bits)

1f8iA Crystal structure of isocitrate lyase:nitropropionate:glyoxylate complex from mycobacterium tuberculosis
    63% identity, 97% coverage of query (553 bits)

A0A3S5YB92 isocitrate lyase (EC 4.1.3.1) from Rhodococcus hoagii (see paper)
    61% identity, 98% coverage of query (541 bits)

icl / CAA82555.1 isocitrate lyase from Rhodococcus fascians (see paper)
    60% identity, 98% coverage of query (533 bits)

7rbxC / Q2YQA0 Crystal structure of isocitrate lyase and phosphorylmutase:isocitrate lyase from brucella melitensis biovar abortus 2308 bound to itaconic acid (see paper)
    62% identity, 95% coverage of query (528 bits)

ACEA_CORGL / P42449 Isocitrate lyase; ICL; Isocitrase; Isocitratase; EC 4.1.3.1 from Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / BCRC 11384 / JCM 1318 / LMG 3730 / NCIMB 10025) (see 3 papers)
    59% identity, 98% coverage of query (525 bits)

Q97YI8 isocitrate lyase (EC 4.1.3.1) from Saccharolobus solfataricus (see paper)
    58% identity, 98% coverage of query (514 bits)

GCP_CAEEL / Q10663 Bifunctional glyoxylate cycle protein; Gex-3-interacting protein 7; EC 4.1.3.1; EC 2.3.3.9 from Caenorhabditis elegans (see 2 papers)
    57% identity, 95% coverage of query (489 bits)

5e9fD / P0CT06 Structural insights of isocitrate lyases from magnaporthe oryzae (see paper)
    36% identity, 93% coverage of query (246 bits)

5e9gD / P0CT06 Structural insights of isocitrate lyases from magnaporthe oryzae (see paper)
    34% identity, 93% coverage of query (235 bits)

icl / CAB37065.1 isocitrate lyase from Eremothecium gossypii (see paper)
    36% identity, 78% coverage of query (176 bits)

ACEA_YEAST / P28240 Isocitrate lyase; ICL; Methylisocitrate lyase; MICA; Threo-D(S)-isocitrate glyoxylate-lyase; EC 4.1.3.1; EC 4.1.3.30 from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) (see 19 papers)
    36% identity, 71% coverage of query (174 bits)

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Build an alignment for PP_4116 and 30 homologs with ≥ 30% identity

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Additional hits (identity < 30%)

ACEA_HYPME / O50078 Isocitrate lyase; ICL; Isocitrase; Isocitratase; EC 4.1.3.1 from Hyphomicrobium methylovorum (see paper)
    29% identity, 81% coverage of query (156 bits)

A8C781 isocitrate lyase (EC 4.1.3.1) from Azotobacter vinelandii (see paper)
    28% identity, 83% coverage of query (139 bits)

Psest_2014 Isocitrate lyase (EC 4.1.3.1) from Pseudomonas stutzeri RCH2
    29% identity, 83% coverage of query (139 bits)

Q9I0K4 isocitrate lyase (EC 4.1.3.1) from Pseudomonas aeruginosa (see 2 papers)
    29% identity, 83% coverage of query (135 bits)

A8C5K8 isocitrate lyase (EC 4.1.3.1) from Colwellia psychrerythraea (see paper)
    30% identity, 73% coverage of query (133 bits)

Q93R40 isocitrate lyase (EC 4.1.3.1) from Colwellia maris (see paper)
    29% identity, 73% coverage of query (130 bits)

6g1oA / Q9I0K4 Structure of pseudomonas aeruginosa isocitrate lyase, icl (see paper)
    29% identity, 72% coverage of query (129 bits)

ACEB_SCHPO / Q9P6J1 Mitochondrial 2-methylisocitrate lyase; Methylisocitrate lyase; EC 4.1.3.30 from Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast) (see paper)
    31% identity, 71% coverage of query (119 bits)

ACEA_HALVD / D4GTL3 Isocitrate lyase; ICL; Isocitrase; Isocitratase; EC 4.1.3.1 from Haloferax volcanii (strain ATCC 29605 / DSM 3757 / JCM 8879 / NBRC 14742 / NCIMB 2012 / VKM B-1768 / DS2) (Halobacterium volcanii) (see 2 papers)
    27% identity, 78% coverage of query (112 bits)

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