Sites on a Tree

 

Searching for up to 100 curated homologs for PP_4737 FitnessBrowser__Putida:PP_4737 (936 a.a.)

Found high-coverage hits (≥70%) to 3 curated proteins.

Removed hits that are identical to the query, leaving 2

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

GYD1 / A8J2E9 glycolate dehydrogenase (EC 1.1.99.14) from Chlamydomonas reinhardtii (see 4 papers)
    46% identity, 99% coverage of query (860 bits)

dld-II / Q8EGS3 D-lactate dehydrogenase Dld-II (EC 1.1.2.5) from Shewanella oneidensis (strain MR-1) (see paper)
    45% identity, 97% coverage of query (798 bits)

Build an alignment

Build an alignment for PP_4737 and 2 homologs with ≥ 30% identity

Select sequences

Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

Or download the sequences

Change minimum %identity:

No additional hits (below 30% identity) were found

Or start over

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory