Searching for up to 100 curated homologs for PP_4894 (86 a.a.)

Found high-coverage hits (≥70%) to 23 curated proteins.

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

3quiA Crystal structure of pseudomonas aeruginosa hfq in complex with adpnp
    94% identity, 83% coverage of query (139 bits)

3m4gF / Q9HUM0 H57a hfq from pseudomonas aeruginosa (see paper)
    93% identity, 83% coverage of query (136 bits)

3quiE Crystal structure of pseudomonas aeruginosa hfq in complex with adpnp
    94% identity, 78% coverage of query (132 bits)

4j6wA Crystal structure of hfq from pseudomonas aeruginosa in complex with ctp
    94% identity, 78% coverage of query (132 bits)

3quiD Crystal structure of pseudomonas aeruginosa hfq in complex with adpnp
    94% identity, 78% coverage of query (130 bits)

HFQ_SALTY / P0A1R0 RNA-binding protein Hfq from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (see 2 papers)
    73% identity, 100% coverage of query (129 bits)

4mmlA D40a hfq from pseudomonas aeruginosa
    93% identity, 78% coverage of query (129 bits)

4j6xA Crystal structure of hfq from pseudomonas aeruginosa in complex with utp
    94% identity, 77% coverage of query (129 bits)

Hfq / b4172 RNA-binding protein Hfq from Escherichia coli K-12 substr. MG1655 (see 56 papers)
HFQ_ECOLI / P0A6X3 RNA-binding protein Hfq; HF-1; Host factor-I protein; HF-I from Escherichia coli (strain K12) (see 8 papers)
    87% identity, 79% coverage of query (128 bits)

4j6wD Crystal structure of hfq from pseudomonas aeruginosa in complex with ctp
    94% identity, 76% coverage of query (128 bits)

HFQ_VIBCH / Q9KV11 RNA-binding protein Hfq from Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) (see paper)
    85% identity, 79% coverage of query (127 bits)

HFQ_PECCC / Q9ZI76 RNA-binding protein Hfq; Bacteriocin gene regulator from Pectobacterium carotovorum subsp. carotovorum (Erwinia carotovora subsp. carotovora) (see paper)
    75% identity, 92% coverage of query (126 bits)

5uk7C Escherichia coli hfq bound to dsdna
    87% identity, 78% coverage of query (124 bits)

4v2sA / P0A6X3 Crystal structure of hfq in complex with the srna rydc (see paper)
    88% identity, 76% coverage of query (122 bits)

2ylcA Structure of salmonella typhimurium hfq in complex with u6 RNA
    88% identity, 74% coverage of query (119 bits)

3gibA Crystal structure of the complex of the e. Coli hfq with poly(a)
    89% identity, 73% coverage of query (119 bits)

3qo3A Crystal structure of escherichia coli hfq, in complex with atp
    87% identity, 71% coverage of query (113 bits)

4pnoA Escherichia coli hfq-RNA complex at 0.97 a resolution
    87% identity, 73% coverage of query (112 bits)

HFQ_AZOC5 / Q43971 RNA-binding protein Hfq from Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 / LMG 6465 / NBRC 14845 / NCIMB 13405 / ORS 571) (see paper)
    55% identity, 85% coverage of query (88.6 bits)

HFQ_BRUA2 / Q2YPW9 RNA-binding protein Hfq from Brucella abortus (strain 2308) (see paper)
    51% identity, 79% coverage of query (82.4 bits)

4nl3F / Q92C58 Crystal structure of listeria monocytogenes hfq in complex with u6 rna (see paper)
    51% identity, 78% coverage of query (71.6 bits)

3hsbB / O31796 Crystal structure of ymah (hfq) from bacillus subtilis in complex with an RNA aptamer (see paper)
    45% identity, 77% coverage of query (69.3 bits)

4y91F / Q9WYZ6 Crystal structure of a thermotoga maritima hfq homolog
    46% identity, 79% coverage of query (68.2 bits)

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