Searching for up to 100 curated homologs for PP_5228 FitnessBrowser__Putida:PP_5228 (287 a.a.)

Found high-coverage hits (≥70%) to 13 curated proteins.

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

DAPF_HAEIN / P44859 Diaminopimelate epimerase; DAP epimerase; PLP-independent amino acid racemase; EC 5.1.1.7 from Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) (see 4 papers)
2gkeA / P44859 Crystal structure of diaminopimelate epimerase in complex with an irreversible inhibitor ll-azidap (see paper)
    58% identity, 95% coverage of query (338 bits)

2gkjA Crystal structure of diaminopimelate epimerase in complex with an irreversible inhibitor dl-azidap
    58% identity, 95% coverage of query (338 bits)

DapF / b3809 diaminopimelate epimerase (EC 5.1.1.7) from Escherichia coli K-12 substr. MG1655 (see 3 papers)
dapF / P0A6K1 diaminopimelate epimerase (EC 5.1.1.7) from Escherichia coli (strain K12) (see 12 papers)
DAPF_ECOLI / P0A6K1 Diaminopimelate epimerase; DAP epimerase; PLP-independent amino acid racemase; EC 5.1.1.7 from Escherichia coli (strain K12) (see 6 papers)
    58% identity, 95% coverage of query (328 bits)

DAPF_ARATH / Q9LFG2 Diaminopimelate epimerase, chloroplastic; DAP epimerase; EC 5.1.1.7 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
Q9LFG2 diaminopimelate epimerase (EC 5.1.1.7) from Arabidopsis thaliana (see paper)
    43% identity, 96% coverage of query (227 bits)

3ejxD / Q9LFG2 Crystal structure of diaminopimelate epimerase from arabidopsis thaliana in complex with ll-azidap (see paper)
    43% identity, 98% coverage of query (225 bits)

3ekmA Crystal structure of diaminopimelate epimerase form arabidopsis thaliana in complex with irreversible inhibitor dl-azidap
    43% identity, 96% coverage of query (225 bits)

DAPF_BACAN / Q81XR2 Diaminopimelate epimerase; DAP epimerase; PLP-independent amino acid racemase; EC 5.1.1.7 from Bacillus anthracis
    40% identity, 92% coverage of query (210 bits)

dcsC / D2Z026 O-ureido-serine racemase (EC 5.1.1.19) from Streptomyces lavendulae (see 2 papers)
DCSC_STRLA / D2Z026 O-ureido-serine racemase; EC 5.1.1.19 from Streptomyces lavendulae (see 3 papers)
D2Z026 O-ureido-serine racemase (EC 5.1.1.19) from Streptomyces lavendulae subsp. lavendulae (see 2 papers)
    45% identity, 96% coverage of query (187 bits)

E4NI20 diaminopimelate epimerase (EC 5.1.1.7) from Kitasatospora setae (see paper)
    35% identity, 93% coverage of query (129 bits)

DAPF_CORGL / Q8NP73 Diaminopimelate epimerase; DAP epimerase; PLP-independent amino acid racemase; EC 5.1.1.7 from Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / BCRC 11384 / JCM 1318 / LMG 3730 / NCIMB 10025) (see paper)
Q8NP73 diaminopimelate epimerase (EC 5.1.1.7) from Corynebacterium glutamicum (see paper)
    30% identity, 96% coverage of query (115 bits)

5m47A / Q8NP73 Crystal structure of dapf from corynebacterium glutamicum in complex with d,l-diaminopimelate (see paper)
    30% identity, 96% coverage of query (115 bits)

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Build an alignment for PP_5228 and 11 homologs with ≥ 30% identity

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Additional hits (identity < 30%)

DAPF_THEMA / Q9X1L0 Diaminopimelate epimerase; DAP epimerase; Dpm epimerase; PLP-independent amino acid racemase; EC 5.1.1.7 from Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8) (see paper)
    27% identity, 84% coverage of query (71.6 bits)

DAPF_MYCTU / P9WP19 Diaminopimelate epimerase; DAP epimerase; PLP-independent amino acid racemase; EC 5.1.1.7 from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) (see 3 papers)
P9WP19 diaminopimelate epimerase (EC 5.1.1.7) from Mycobacterium tuberculosis (see 2 papers)
    28% identity, 94% coverage of query (71.6 bits)

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