Sites on a Tree

 

Searching for up to 100 curated homologs for Pf1N1B4_1105 FitnessBrowser__pseudo1_N1B4:Pf1N1B4_1105 (126 a.a.)

Found high-coverage hits (≥70%) to 8 curated proteins.

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

pcaC / AAC37152.1 gamma-carboxymuconolactone decarboxylase from Acinetobacter baylyi (see 11 papers)
    48% identity, 90% coverage of query (119 bits)

pcaC / AAF34269.1 gamma carboxymuconolactone decarboxylase from Agrobacterium tumefaciens (see 2 papers)
    48% identity, 88% coverage of query (111 bits)

pcaL / AAC38246.1 3-oxoadipate enol-lactone hydrolase/4-carboxymuconolactone decarboxylase from Rhodococcus opacus (see paper)
    45% identity, 94% coverage of query (110 bits)

Q0SH24 3-oxoadipate enol-lactonase (EC 3.1.1.24); 4-carboxymuconolactone decarboxylase (EC 4.1.1.44) from Rhodococcus jostii (see paper)
    49% identity, 79% coverage of query (108 bits)

Q9L5B1 4-carboxymuconolactone decarboxylase (EC 4.1.1.44) from Sagittula stellata E-37 (see paper)
    39% identity, 94% coverage of query (98.2 bits)

Q6SJC5 4-carboxymuconolactone decarboxylase (EC 4.1.1.44) from Roseovarius nubinhibens ISM (see paper)
    41% identity, 88% coverage of query (94.7 bits)

Q6SJA7 4-carboxymuconolactone decarboxylase (EC 4.1.1.44) from Sulfitobacter sp. (see paper)
    40% identity, 94% coverage of query (94.4 bits)

Q6SJB9 4-carboxymuconolactone decarboxylase (EC 4.1.1.44) from Ruegeria pomeroyi (see paper)
    42% identity, 95% coverage of query (92.0 bits)

Build an alignment

Build an alignment for Pf1N1B4_1105 and 8 homologs with ≥ 30% identity

Select sequences

Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

Or download the sequences

Change minimum %identity:

No additional hits (below 30% identity) were found

Or start over

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory