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Searching for up to 100 curated homologs for Pf1N1B4_1623 FitnessBrowser__pseudo1_N1B4:Pf1N1B4_1623 (256 a.a.)

Found high-coverage hits (≥70%) to 50 curated proteins.

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

hisF / BAC65276.1 imidazole glycerol phosphate synthase from Burkholderia multivorans (see paper)
    73% identity, 100% coverage of query (385 bits)

Q5NMD6 imidazole glycerol-phosphate synthase (subunit 2/2) (EC 4.3.2.10) from Zymomonas mobilis (see paper)
    58% identity, 100% coverage of query (307 bits)

HIS6_THET8 / Q7SIB9 Imidazole glycerol phosphate synthase subunit HisF; IGP synthase cyclase subunit; IGP synthase subunit HisF; ImGP synthase subunit HisF; IGPS subunit HisF; EC 4.3.2.10 from Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8) (see paper)
Q7SIB9 imidazole glycerol-phosphate synthase (subunit 1/2) (EC 4.3.2.10) from Thermus thermophilus (see paper)
    58% identity, 100% coverage of query (281 bits)

A4WHB6 imidazole glycerol-phosphate synthase (subunit 2/2) (EC 4.3.2.10) from Pyrobaculum arsenaticum (see paper)
    57% identity, 99% coverage of query (272 bits)

Q8ZY16 imidazole glycerol-phosphate synthase (subunit 2/2) (EC 4.3.2.10) from Pyrobaculum aerophilum (see paper)
    54% identity, 100% coverage of query (253 bits)

1h5yB / Q8ZY16 Hisf protein from pyrobaculum aerophilum (see paper)
    54% identity, 99% coverage of query (252 bits)

hisF / Q9X0C6 imidazole-glycerol-phosphate synthase cycloligase subunit (EC 4.3.2.10) from Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8) (see paper)
HIS6_THEMA / Q9X0C6 Imidazole glycerol phosphate synthase subunit HisF; IGP synthase cyclase subunit; IGP synthase subunit HisF; ImGP synthase subunit HisF; IGPS subunit HisF; EC 4.3.2.10 from Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8) (see paper)
Q9X0C6 imidazole glycerol-phosphate synthase (subunit 2/2) (EC 4.3.2.10) from Thermotoga maritima (see 5 papers)
    52% identity, 99% coverage of query (245 bits)

7ac8A Molecular basis for the unique allosteric activation mechanism of the heterodimeric imidazole glycerol phosphate synthase complex.
    52% identity, 99% coverage of query (245 bits)

1gpwC Structural evidence for ammonia tunneling across the (beta/alpha)8 barrel of the imidazole glycerol phosphate synthase bienzyme complex.
    51% identity, 99% coverage of query (243 bits)

7qc8A / Q9X0C6 7qc8A (see paper)
    49% identity, 100% coverage of query (232 bits)

4ewnD Structure of hisf-d130v+d176v with bound rcdrp
    49% identity, 99% coverage of query (224 bits)

3zr4E Structural evidence for ammonia tunneling across the (beta-alpha)8 barrel of the imidazole glycerol phosphate synthase bienzyme complex
    49% identity, 99% coverage of query (224 bits)

5d2tA Directed evolutionary changes in kemp eliminase ke07 - crystal 3 wild type
    47% identity, 99% coverage of query (224 bits)

6dnjA Directed evolutionary changes in kemp eliminase ke07 - crystal 28 round 5
    46% identity, 99% coverage of query (221 bits)

2wjzE Crystal structure of (hish) k181a y138a mutant of imidazoleglycerolphosphate synthase (hish hisf) which displays constitutive glutaminase activity
    48% identity, 99% coverage of query (212 bits)

3iivB Evolutionary optimization of computationally designed enzymes: kemp eliminases of the ke07 series (see paper)
    46% identity, 100% coverage of query (211 bits)

HisF / b2025 imidazole glycerol phosphate synthase subunit HisF (EC 4.3.2.10) from Escherichia coli K-12 substr. MG1655 (see 6 papers)
hisF / P60664 imidazole glycerol phosphate synthase subunit HisF (EC 4.3.2.10) from Escherichia coli (strain K12) (see 7 papers)
HIS6_ECOLI / P60664 Imidazole glycerol phosphate synthase subunit HisF; IGP synthase cyclase subunit; IGP synthase subunit HisF; ImGP synthase subunit HisF; IGPS subunit HisF; EC 4.3.2.10 from Escherichia coli (strain K12) (see paper)
hisF / RF|NP_416529 IGP synthase cyclase subunit; EC 4.1.3.- from Escherichia coli K12 (see 7 papers)
    42% identity, 99% coverage of query (211 bits)

HIS5_YEAST / P33734 Imidazole glycerol phosphate synthase hisHF; IGP synthase; IGPS; ImGP synthase; EC 4.3.2.10; EC 3.5.1.2 from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) (see 3 papers)
P33734 imidazole glycerol-phosphate synthase (EC 4.3.2.10) from Saccharomyces cerevisiae (see 4 papers)
    36% identity, 99% coverage of query (172 bits)

1ox4B / P33734 Towards understanding the mechanism of the complex cyclization reaction catalyzed by imidazole glycerophosphate synthase (see paper)
    37% identity, 99% coverage of query (170 bits)

1ox5A Towards understanding the mechanism of the complex cyclization reaction catalyzed by imidazole glycerophosphate synthase
    37% identity, 99% coverage of query (169 bits)

At-HF / Q9SZ30 imidazole-glycerol-phosphate synthase (EC 4.3.2.10) from Arabidopsis thaliana (see paper)
Q9SZ30 imidazole glycerol-phosphate synthase (EC 4.3.2.10) from Arabidopsis thaliana (see paper)
    36% identity, 99% coverage of query (158 bits)

hisA / BAC65275.1 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase from Burkholderia multivorans (see paper)
    33% identity, 82% coverage of query (108 bits)

PP_0292 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) from Pseudomonas putida KT2440
    30% identity, 94% coverage of query (108 bits)

PS417_01575 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) from Pseudomonas simiae WCS417
    32% identity, 94% coverage of query (105 bits)

AO356_09800 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) from Pseudomonas fluorescens FW300-N2C3
    30% identity, 94% coverage of query (105 bits)

Pf6N2E2_3839 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) from Pseudomonas fluorescens FW300-N2E2
    30% identity, 94% coverage of query (104 bits)

Psest_0155 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) from Pseudomonas stutzeri RCH2
    31% identity, 94% coverage of query (104 bits)

Pf1N1B4_1624 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) from Pseudomonas fluorescens FW300-N1B4
    31% identity, 94% coverage of query (104 bits)

PfGW456L13_359 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) from Pseudomonas fluorescens GW456-L13
    32% identity, 94% coverage of query (103 bits)

AO353_12085 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) from Pseudomonas fluorescens FW300-N2E3
    31% identity, 94% coverage of query (103 bits)

SMc02570 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) from Sinorhizobium meliloti 1021
    31% identity, 82% coverage of query (102 bits)

BPHYT_RS17685 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) from Burkholderia phytofirmans PsJN
    31% identity, 82% coverage of query (98.2 bits)

HSERO_RS20320 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) from Herbaspirillum seropedicae SmR1
    30% identity, 89% coverage of query (96.7 bits)

Build an alignment

Build an alignment for Pf1N1B4_1623 and 33 homologs with ≥ 30% identity

Select sequences

Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

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Change minimum %identity:

Additional hits (identity < 30%)

AZOBR_RS01680 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) from Azospirillum brasilense Sp245
    29% identity, 82% coverage of query (90.9 bits)

CCNA_03852 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) from Caulobacter crescentus NA1000
    25% identity, 95% coverage of query (90.1 bits)

P10372 1-(5-phosphoribosyl)-5-[(5 phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase (EC 5.3.1.16) from Salmonella enterica subsp. enterica serovar Typhimurium (see paper)
    28% identity, 93% coverage of query (87.0 bits)

5ab3A S.Enterica hisa mutant d7n, d10g, dup13-15, q24l, g102a
    28% identity, 93% coverage of query (86.7 bits)

5abtA / P10372 S.Enterica hisa mutant d7n, g102a, v106m, d176a
    27% identity, 93% coverage of query (80.5 bits)

HisA / b2024 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase (EC 5.3.1.16) from Escherichia coli K-12 substr. MG1655 (see 5 papers)
hisA / P10371 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase (EC 5.3.1.16) from Escherichia coli (strain K12) (see 2 papers)
    27% identity, 94% coverage of query (80.1 bits)

CA265_RS03615 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) from Pedobacter sp. GW460-11-11-14-LB5
    26% identity, 94% coverage of query (77.0 bits)

Echvi_2515 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) from Echinicola vietnamensis KMM 6221, DSM 17526
    27% identity, 82% coverage of query (73.9 bits)

Ga0059261_1047 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) from Sphingomonas koreensis DSMZ 15582
    27% identity, 82% coverage of query (72.4 bits)

4tx9A / B5I4P8 Crystal structure of hisap from streptomyces sviceus with degraded profar (see paper)
    27% identity, 82% coverage of query (69.3 bits)

hisA / CAQ00038.1 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase from Rhodococcus erythropolis (see paper)
    24% identity, 95% coverage of query (68.9 bits)

3zs4A Crystal structure of mycobacterium tuberculosis phosphoribosyl isomerase with bound prfar
    27% identity, 82% coverage of query (68.9 bits)

HIS4_STRCO / P16250 Phosphoribosyl isomerase A; 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; N-(5'-phosphoribosyl)anthranilate isomerase; PRAI; Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; EC 5.3.1.16; EC 5.3.1.24 from Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145) (see paper)
P16250 phosphoribosylanthranilate isomerase (EC 5.3.1.24) from Streptomyces coelicolor (see paper)
5dn1A / P16250 Crystal structure of phosphoribosyl isomerase a from streptomyces coelicolor (see paper)
    26% identity, 93% coverage of query (68.6 bits)

HIS4_THEMA / Q9X0C7 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; EC 5.3.1.16 from Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8) (see paper)
    23% identity, 94% coverage of query (68.2 bits)

2y85A Crystal structure of mycobacterium tuberculosis phosphoribosyl isomerase with bound rcdrp
    25% identity, 82% coverage of query (67.8 bits)

2y88A / P9WMM5 Crystal structure of mycobacterium tuberculosis phosphoribosyl isomerase (variant d11n) with bound prfar (see paper)
    26% identity, 82% coverage of query (67.4 bits)

BT1379 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) from Bacteroides thetaiotaomicron VPI-5482
    20% identity, 85% coverage of query (63.2 bits)

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by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory