Sites on a Tree

 

Searching for up to 100 curated homologs for Pf1N1B4_2255 FitnessBrowser__pseudo1_N1B4:Pf1N1B4_2255 (258 a.a.)

Found high-coverage hits (≥70%) to 16 curated proteins.

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

AO356_13140 Gamma-glutamyl-GABA hydrolase (EC 3.5.1.94) from Pseudomonas fluorescens FW300-N2C3
    83% identity, 100% coverage of query (442 bits)

Pf6N2E2_4510 Gamma-glutamyl-GABA hydrolase (EC 3.5.1.94) from Pseudomonas fluorescens FW300-N2E2
    83% identity, 100% coverage of query (415 bits)

7d50B / Q9I6J4 Spua mutant - h221n with glutamyl-thioester (see paper)
    75% identity, 97% coverage of query (394 bits)

7d53A Spua mutant - h221n with glu
    75% identity, 97% coverage of query (392 bits)

AO353_29305 Gamma-glutamyl-GABA hydrolase (EC 3.5.1.94) from Pseudomonas fluorescens FW300-N2E3
    72% identity, 97% coverage of query (350 bits)

7d4rB / Q9I6J4 Spua native structure (see paper)
    66% identity, 95% coverage of query (321 bits)

Sama_2645 Gamma-glutamyl-GABA hydrolase (EC 3.5.1.94) from Shewanella amazonensis SB2B
    62% identity, 96% coverage of query (316 bits)

SO1267 Gamma-glutamyl-gamma-aminobutyrate hydrolase (EC 3.5.1.94) from Shewanella oneidensis MR-1
    63% identity, 96% coverage of query (313 bits)

Sama_0794 gamma-glutamyl-gamma-aminobutyrate hydrolase (EC: 3.5.1.94) from Shewanella amazonensis SB2B
    44% identity, 95% coverage of query (212 bits)

YcjL / b1298 γ-glutamyl-γ-aminobutyrate hydrolase (EC 3.5.1.94) from Escherichia coli K-12 substr. MG1655 (see 5 papers)
puuD / P76038 γ-glutamyl-γ-aminobutyrate hydrolase (EC 3.5.1.94) from Escherichia coli (strain K12) (see 4 papers)
PUUD_ECOLI / P76038 Gamma-glutamyl-gamma-aminobutyrate hydrolase PuuD; Gamma-Glu-GABA hydrolase; EC 3.5.1.94 from Escherichia coli (strain K12) (see 2 papers)
P76038 gamma-glutamyl-gamma-aminobutyrate hydrolase (EC 3.5.1.94) from Escherichia coli K-12 (see paper)
puuD / GI|58197513 gamma-glutamyl-gamma-aminobutyrate hydrolase; EC 3.5.1.94 from Escherichia coli K12 (see 4 papers)
puuD / BAD88706.1 gamma-glutamyl-gamma-aminobutyrate hydrolase from Escherichia coli K-12 (see paper)
    45% identity, 96% coverage of query (201 bits)

6vtvB / P76038 Crystal structure of puud gamma-glutamyl-gamma-aminobutyrate hydrolase from e. Coli
    45% identity, 96% coverage of query (201 bits)

BWI76_RS10705 Gamma-glutamyl-gamma-aminobutyrate hydrolase (EC 3.5.1.94) from Klebsiella michiganensis M5al
    44% identity, 96% coverage of query (193 bits)

3fijA / Q92AL3 Crystal structure of a uncharacterized protein lin1909
    36% identity, 85% coverage of query (117 bits)

YHE5_SCHPO / Q9HDV0 Putative glutamine amidotransferase PB2B2.05 from Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast) (see paper)
    36% identity, 87% coverage of query (115 bits)

O33341 Putative glutamine amidotransferase Rv2859c; EC 2.4.2.- from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
    35% identity, 94% coverage of query (108 bits)

Build an alignment

Build an alignment for Pf1N1B4_2255 and 15 homologs with ≥ 30% identity

Select sequences

Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

Or download the sequences

Change minimum %identity:

Additional hits (identity < 30%)

2ywcA / Q5SI28 Crystal structure of gmp synthetase from thermus thermophilus in complex with xmp
    25% identity, 83% coverage of query (42.7 bits)

Or start over

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory