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Searching for up to 100 curated homologs for Pf1N1B4_3300 FitnessBrowser__pseudo1_N1B4:Pf1N1B4_3300 (592 a.a.)

Found high-coverage hits (≥70%) to 27 curated proteins.

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

atzF / Q936X2 allophanate hydrolase subunit from Pseudomonas sp. (strain ADP) (see 2 papers)
ATZF_PSESD / Q936X2 Allophanate hydrolase; EC 3.5.1.54 from Pseudomonas sp. (strain ADP) (see 2 papers)
Q936X2 allophanate hydrolase (EC 3.5.1.54) from Pseudomonas sp. ADP (see paper)
    46% identity, 95% coverage of query (465 bits)

Q0BRB0 allophanate hydrolase (EC 3.5.1.54) from Granulibacter bethesdensis (see 2 papers)
    46% identity, 99% coverage of query (458 bits)

Q9ALV2 allophanate hydrolase (EC 3.5.1.54) from Enterobacter cloacae (see 2 papers)
    47% identity, 89% coverage of query (457 bits)

DUR1,2 likely multifunctional urea amidolyase from Candida albicans (see paper)
    44% identity, 95% coverage of query (444 bits)

A0A1D8PDC6 allophanate hydrolase (EC 3.5.1.54) from Candida albicans (see paper)
    44% identity, 95% coverage of query (442 bits)

DUR1,2 / P32528 urea amidolyase (EC 6.3.4.6) from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (see 6 papers)
DUR1_YEAST / P32528 Urea amidolyase; EC 6.3.4.6; EC 3.5.1.54 from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) (see paper)
P32528 allophanate hydrolase (EC 3.5.1.54); urea carboxylase (EC 6.3.4.6) from Saccharomyces cerevisiae (see 3 papers)
    42% identity, 98% coverage of query (427 bits)

DUR1.2 / AAC41643.1 urea amidolyase from Saccharomyces cerevisiae (see paper)
    42% identity, 98% coverage of query (423 bits)

DUR1_LACKL / A5H0J2 Urea amidolyase; Pyrimidine-degrading protein 13,15; Uracil catabolism protein 3,5; EC 6.3.4.6; EC 3.5.1.54 from Lachancea kluyveri (Yeast) (Saccharomyces kluyveri) (see paper)
    43% identity, 97% coverage of query (423 bits)

Q6CP22 allophanate hydrolase (EC 3.5.1.54); urea carboxylase (EC 6.3.4.6) from Kluyveromyces lactis (see 3 papers)
    42% identity, 96% coverage of query (404 bits)

gatA / Q9RTA9 glutamyl-tRNAGln amidotransferase subunit A (EC 6.3.5.7; EC 6.3.5.6) from Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / CCUG 27074 / LMG 4051 / NBRC 15346 / NCIMB 9279 / VKM B-1422 / R1) (see paper)
    32% identity, 72% coverage of query (132 bits)

Build an alignment

Build an alignment for Pf1N1B4_3300 and 10 homologs with ≥ 30% identity

Select sequences

Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

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Change minimum %identity:

Additional hits (identity < 30%)

GATA_HUMAN / Q9H0R6 Glutamyl-tRNA(Gln) amidotransferase subunit A, mitochondrial; Glu-AdT subunit A; Glutaminyl-tRNA synthase-like protein 1; EC 6.3.5.7 from Homo sapiens (Human) (see 3 papers)
Q9H0R6 glutaminyl-tRNA synthase (glutamine-hydrolysing) (EC 6.3.5.7) from Homo sapiens (see paper)
    28% identity, 74% coverage of query (124 bits)

Q9CZN8 glutaminyl-tRNA synthase (glutamine-hydrolysing) (EC 6.3.5.7) from Mus musculus (see paper)
    29% identity, 74% coverage of query (122 bits)

FAAH_MEDTR / G7ISB0 Fatty acid amide hydrolase; N-acylethanolamine amidohydrolase; EC 3.5.1.- from Medicago truncatula (Barrel medic) (Medicago tribuloides) (see paper)
    26% identity, 76% coverage of query (106 bits)

3h0lA / O66610 Structure of tRNA-dependent amidotransferase gatcab from aquifex aeolicus (see paper)
    25% identity, 74% coverage of query (106 bits)

3h0mA Structure of tRNA-dependent amidotransferase gatcab from aquifex aeolicus
    25% identity, 74% coverage of query (106 bits)

3kfuE / Q9LCX3 Crystal structure of the transamidosome (see paper)
    31% identity, 73% coverage of query (102 bits)

gatA / O06491 glutamyl-tRNAGln amidotransferase subunit A (EC 6.3.5.7) from Bacillus subtilis (strain 168) (see paper)
GATA_BACSU / O06491 Glutamyl-tRNA(Gln) amidotransferase subunit A; Glu-ADT subunit A; EC 6.3.5.7 from Bacillus subtilis (strain 168) (see 2 papers)
    27% identity, 75% coverage of query (99.4 bits)

6diiH / Q7XJJ7 Structure of arabidopsis fatty acid amide hydrolase in complex with methyl linolenyl fluorophosphonate (see paper)
    27% identity, 74% coverage of query (97.8 bits)

cahA / BAC15598.1 carbaryl hydrolase from Arthrobacter sp. RC100 (see paper)
    28% identity, 74% coverage of query (97.4 bits)

P63488 glutaminyl-tRNA synthase (glutamine-hydrolysing) (subunit 2/2) (EC 6.3.5.7) from Staphylococcus aureus (see paper)
2dqnA / P63488 Structure of tRNA-dependent amidotransferase gatcab complexed with asn (see paper)
    28% identity, 73% coverage of query (90.5 bits)

2f2aA Structure of tRNA-dependent amidotransferase gatcab complexed with gln
    28% identity, 73% coverage of query (90.5 bits)

MANHY_PSEPU / Q84DC4 Mandelamide hydrolase; EC 3.5.1.86 from Pseudomonas putida (Arthrobacter siderocapsulatus) (see 3 papers)
    27% identity, 74% coverage of query (83.2 bits)

AAM_RHOER / K9NBS6 Acylamidase; EC 3.5.1.13; EC 3.5.1.14; EC 3.5.1.4 from Rhodococcus erythropolis (Arthrobacter picolinophilus) (see paper)
    25% identity, 75% coverage of query (73.9 bits)

1o9oA / Q9ZIV5 Crystal structure of the s131a mutant of malonamidase e2 complexed with malonamate from bradyrhizobium japonicum (see paper)
    27% identity, 75% coverage of query (72.0 bits)

F6N111 aryl-acylamidase (EC 3.5.1.13) from Paracoccus sp. M1-1 (see paper)
G9FKH7 amidase (EC 3.5.1.4) from Paracoccus sp. (see paper)
    23% identity, 73% coverage of query (71.6 bits)

1ocmA The crystal structure of malonamidase e2 covalently complexed with pyrophosphate from bradyrhizobium japonicum
    28% identity, 75% coverage of query (71.6 bits)

3a2qA / P13398 Structure of 6-aminohexanoate cyclic dimer hydrolase complexed with substrate (see paper)
    24% identity, 75% coverage of query (53.9 bits)

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by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory