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Searching for up to 100 curated homologs for Pf1N1B4_411 FitnessBrowser__pseudo1_N1B4:Pf1N1B4_411 (334 a.a.)

Found high-coverage hits (≥70%) to 9 curated proteins.

Removed hits that are identical to the query, leaving 8

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

Pf6N2E2_5968 ABC transporter for D-galactose/L-arabinose, substrate-binding component from Pseudomonas fluorescens FW300-N2E2
    91% identity, 100% coverage of query (620 bits)

AraF / b1901 arabinose ABC transporter periplasmic binding protein (EC 7.5.2.13; EC 7.5.2.12) from Escherichia coli K-12 substr. MG1655 (see 4 papers)
AraF / P02924 arabinose ABC transporter periplasmic binding protein (EC 7.5.2.13) from Escherichia coli (strain K12) (see 2 papers)
ARAF_ECOLI / P02924 L-arabinose-binding periplasmic protein; ABP from Escherichia coli (strain K12) (see paper)
TC 3.A.1.2.2 / P02924 AraF aka B1901, component of Arabinose porter from Escherichia coli (see 10 papers)
    59% identity, 96% coverage of query (370 bits)

1abeA / P02924 Novel stereospecificity of the l-arabinose-binding protein (see paper)
    60% identity, 90% coverage of query (363 bits)

5abpA Substrate specificity and affinity of a protein modulated by bound water molecules
    60% identity, 90% coverage of query (363 bits)

1abfA Substrate specificity and affinity of a protein modulated by bound water molecules
    60% identity, 90% coverage of query (363 bits)

BPHYT_RS16935 D-galactose ABC transporter, substrate-binding component from Burkholderia phytofirmans PsJN
    49% identity, 99% coverage of query (300 bits)

4kzkA / Q2T607 The structure of the periplasmic l-arabinose binding protein from burkholderia thailandensis
    45% identity, 90% coverage of query (256 bits)

Build an alignment

Build an alignment for Pf1N1B4_411 and 7 homologs with ≥ 30% identity

Select sequences

Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

Or download the sequences

Change minimum %identity:

Additional hits (identity < 30%)

TC 3.A.1.2.11 / Q92WK4 EryG aka RB0335, component of The erythritol permease, EryEFG (Geddes et al., 2010) (probably orthologous to 3.A.1.2.16) from Rhizobium meliloti (Sinorhizobium meliloti) (see paper)
    22% identity, 90% coverage of query (47.4 bits)

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by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory