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Searching for up to 100 curated homologs for Pf1N1B4_4623 FitnessBrowser__pseudo1_N1B4:Pf1N1B4_4623 (330 a.a.)

Found high-coverage hits (≥70%) to 11 curated proteins.

Removed hits that are identical to the query, leaving 10

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

PfGW456L13_3317 2-dehydro-3-deoxy-L-arabinonate dehydratase (EC 4.2.1.43) from Pseudomonas fluorescens GW456-L13
    91% identity, 100% coverage of query (625 bits)

Pf6N2E2_611 2-dehydro-3-deoxy-L-arabinonate dehydratase (EC 4.2.1.43) from Pseudomonas fluorescens FW300-N2E2
    88% identity, 100% coverage of query (610 bits)

AO356_24595 2-dehydro-3-deoxy-L-arabinonate dehydratase (EC 4.2.1.43) from Pseudomonas fluorescens FW300-N2C3
    88% identity, 100% coverage of query (608 bits)

kdlD / Q9I1Q1 2-keto-3-deoxy-L-lyxonate dehydratase (EC 4.2.1.43) from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) (see paper)
    73% identity, 100% coverage of query (497 bits)

SM_b20892 2-dehydro-3-deoxy-L-arabinonate dehydratase (EC 4.2.1.43) from Sinorhizobium meliloti 1021
    58% identity, 88% coverage of query (361 bits)

Build an alignment

Build an alignment for Pf1N1B4_4623 and 5 homologs with ≥ 30% identity

Select sequences

Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

Or download the sequences

Change minimum %identity:

Additional hits (identity < 30%)

3bqbX / Q97UA0 Hexagonal kristal form of 2-keto-3-deoxyarabinonate dehydratase (see paper)
    25% identity, 86% coverage of query (52.0 bits)

2q1cX 2-keto-3-deoxy-d-arabinonate dehydratase complexed with calcium and 2- oxobutyrate
    25% identity, 86% coverage of query (52.0 bits)

2q1aX 2-keto-3-deoxy-d-arabinonate dehydratase complexed with magnesium and 2-oxobutyrate
    25% identity, 86% coverage of query (52.0 bits)

kdaD / Q97UA0 2-keto-3-deoxy-D-arabinonate dehydratase subunit (EC 4.2.1.141) from Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) (see 2 papers)
KDAD_SACS2 / Q97UA0 2-dehydro-3-deoxy-D-arabinonate dehydratase; 2-keto-3-deoxy-D-arabinonate dehydratase; KdaD; EC 4.2.1.141 from Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) (Sulfolobus solfataricus) (see 2 papers)
Q97UA0 2-dehydro-3-deoxy-D-arabinonate dehydratase (EC 4.2.1.141) from Saccharolobus solfataricus (see 2 papers)
    25% identity, 86% coverage of query (51.6 bits)

2q1dX 2-keto-3-deoxy-d-arabinonate dehydratase complexed with magnesium and 2,5-dioxopentanoate
    24% identity, 86% coverage of query (49.3 bits)

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by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory