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Searching for up to 100 curated homologs for Pf1N1B4_621 FitnessBrowser__pseudo1_N1B4:Pf1N1B4_621 (950 a.a.)

Found high-coverage hits (≥70%) to 22 curated proteins.

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

PfGW456L13_1868 Glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) from Pseudomonas fluorescens GW456-L13
    96% identity, 100% coverage of query (1821 bits)

AO353_03500 Glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) from Pseudomonas fluorescens FW300-N2E3
    95% identity, 100% coverage of query (1805 bits)

Pf6N2E2_5558 Glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) from Pseudomonas fluorescens FW300-N2E2
    93% identity, 100% coverage of query (1740 bits)

PS417_22360 Glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) from Pseudomonas simiae WCS417
    93% identity, 100% coverage of query (1739 bits)

4lhdA / P74416 Crystal structure of synechocystis sp. Pcc 6803 glycine decarboxylase (p-protein), holo form with pyridoxal-5'-phosphate and glycine, closed flexible loop (see paper)
    61% identity, 99% coverage of query (1149 bits)

BWI76_RS23870 Glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) from Klebsiella michiganensis M5al
    61% identity, 100% coverage of query (1139 bits)

GcvP / b2903 glycine decarboxylase (EC 1.4.4.2) from Escherichia coli K-12 substr. MG1655 (see 7 papers)
gcvP / P33195 glycine decarboxylase (EC 1.4.4.2) from Escherichia coli (strain K12) (see 5 papers)
GCSP_ECOLI / P33195 Glycine dehydrogenase (decarboxylating); Glycine cleavage system P-protein; Glycine decarboxylase; Glycine dehydrogenase (aminomethyl-transferring); EC 1.4.4.2 from Escherichia coli (strain K12) (see paper)
P33195 glycine cleavage system (subunit 1/3) (EC 1.4.1.27) from Escherichia coli (see paper)
gcvP glycine dehydrogenase [decarboxylating]; EC 1.4.4.2 from Escherichia coli K12 (see 4 papers)
    60% identity, 100% coverage of query (1138 bits)

GCSP_PEA / P26969 Glycine dehydrogenase (decarboxylating), mitochondrial; Glycine cleavage system P protein; Glycine decarboxylase; Glycine dehydrogenase (aminomethyl-transferring); EC 1.4.4.2 from Pisum sativum (Garden pea) (Lathyrus oleraceus) (see paper)
P26969 glycine cleavage system (subunit 3/4) (EC 1.4.1.27) from Pisum sativum (see paper)
    58% identity, 99% coverage of query (1113 bits)

GCSP1_ARATH / Q94B78 Glycine dehydrogenase (decarboxylating) 1, mitochondrial; Glycine cleavage system P protein 1; Glycine decarboxylase 1; Glycine decarboxylase P-protein 1; AtGLDP1; Glycine dehydrogenase (aminomethyl-transferring) 1; EC 1.4.4.2 from Arabidopsis thaliana (Mouse-ear cress) (see 3 papers)
Q94B78 glycine cleavage system (subunit 4/5) (EC 1.4.1.27) from Arabidopsis thaliana (see paper)
    57% identity, 98% coverage of query (1105 bits)

A9PL02 glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) from Populus tremuloides (see paper)
    57% identity, 99% coverage of query (1100 bits)

GCSP2_ARATH / O80988 Glycine dehydrogenase (decarboxylating) 2, mitochondrial; Glycine cleavage system P protein 2; Glycine decarboxylase 2; Glycine decarboxylase P-protein 2; AtGLDP2; Glycine dehydrogenase (aminomethyl-transferring) 2; EC 1.4.4.2 from Arabidopsis thaliana (Mouse-ear cress) (see 2 papers)
    57% identity, 99% coverage of query (1097 bits)

GCSPA_FLAPR / P49361 Glycine dehydrogenase (decarboxylating) A, mitochondrial; Glycine cleavage system P protein A; Glycine decarboxylase A; Glycine dehydrogenase (aminomethyl-transferring) A; EC 1.4.4.2 from Flaveria pringlei (see paper)
gdcsPA / CAA85353.1 P-protein of the glycine cleavage system from Flaveria pringlei (see 2 papers)
    55% identity, 99% coverage of query (1097 bits)

Q91W43 glycine cleavage system (EC 1.4.1.27) from Mus musculus (see paper)
    55% identity, 99% coverage of query (1063 bits)

GLDC / P23378 Glycine dehydrogenase [decarboxylating], mitochondrial (EC 1.4.4.2) from Homo sapiens (see 5 papers)
GCSP_HUMAN / P23378 Glycine dehydrogenase (decarboxylating), mitochondrial; Glycine cleavage system P protein; Glycine decarboxylase; Glycine dehydrogenase (aminomethyl-transferring); EC 1.4.4.2 from Homo sapiens (Human) (see 7 papers)
P23378 glycine cleavage system (subunit 4/4) (EC 1.4.1.27); glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) from Homo sapiens (see 4 papers)
    55% identity, 99% coverage of query (1050 bits)

6i34B / P23378 Crystal structure of neanderthal glycine decarboxylase (p-protein)
    55% identity, 98% coverage of query (1048 bits)

6i35A Crystal structure of human glycine decarboxylase (p-protein) bound with pyridoxyl-glycine-5'-monophosphate
    55% identity, 99% coverage of query (1046 bits)

6i33A Crystal structure of human glycine decarboxylase (p-protein)
    55% identity, 99% coverage of query (1046 bits)

GLDC / P15505 glycine decarboxylase subunit (EC 1.4.4.2) from Gallus gallus (see paper)
GCSP_CHICK / P15505 Glycine dehydrogenase (decarboxylating), mitochondrial; Glycine cleavage system P protein; Glycine decarboxylase; Glycine dehydrogenase (aminomethyl-transferring); EC 1.4.4.2 from Gallus gallus (Chicken) (see 3 papers)
P15505 glycine cleavage system (EC 1.4.1.27); glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) from Gallus gallus (see 5 papers)
    54% identity, 99% coverage of query (1030 bits)

6i33B / P23378 Crystal structure of human glycine decarboxylase (p-protein)
    53% identity, 98% coverage of query (1002 bits)

GCSP_SCHPO / Q09785 Putative glycine dehydrogenase (decarboxylating), mitochondrial; Glycine cleavage system P protein; Glycine decarboxylase; Glycine dehydrogenase (aminomethyl-transferring); EC 1.4.4.2 from Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast) (see paper)
    52% identity, 99% coverage of query (992 bits)

GCSP_YEAST / P49095 Glycine dehydrogenase (decarboxylating), mitochondrial; Glycine cleavage system P protein; Glycine decarboxylase; Glycine decarboxylase complex subunit P; Glycine dehydrogenase (aminomethyl-transferring); EC 1.4.4.2 from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) (see 2 papers)
    51% identity, 99% coverage of query (969 bits)

D4A5Q9 glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) from Rattus norvegicus (see paper)
    50% identity, 71% coverage of query (676 bits)

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Build an alignment for Pf1N1B4_621 and 22 homologs with ≥ 30% identity

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by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory