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Searching for up to 100 curated homologs for PfGW456L13_1122 FitnessBrowser__pseudo13_GW456_L13:PfGW456L13_1122 (399 a.a.)

Found high-coverage hits (≥70%) to 25 curated proteins.

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

FADH_PSEPU / P46154 Glutathione-independent formaldehyde dehydrogenase; FALDH; FDH; Formaldehyde dismutase; EC 1.2.1.46; EC 1.2.98.1 from Pseudomonas putida (Arthrobacter siderocapsulatus) (see 3 papers)
P46154 formaldehyde dehydrogenase (EC 1.2.1.46) from Pseudomonas putida (see paper)
    93% identity, 100% coverage of query (746 bits)

1kolA / P46154 Crystal structure of formaldehyde dehydrogenase (see paper)
    93% identity, 99% coverage of query (741 bits)

Q9HTE3 formaldehyde dehydrogenase (EC 1.2.1.46) from Pseudomonas aeruginosa (see paper)
    87% identity, 100% coverage of query (690 bits)

4jlwA Crystal structure of formaldehyde dehydrogenase from pseudomonas aeruginosa (see paper)
    87% identity, 99% coverage of query (683 bits)

YYCR_BACSU / Q45604 Uncharacterized zinc-type alcohol dehydrogenase-like protein YycR; EC 1.-.-.- from Bacillus subtilis (strain 168) (see paper)
    65% identity, 98% coverage of query (519 bits)

A0A6F8QRG1 formaldehyde dismutase (EC 1.2.98.1) from Methylobacterium sp. FD1 (see paper)
    58% identity, 98% coverage of query (467 bits)

A0A224AQI3 formaldehyde dismutase (EC 1.2.98.1) from Methylobacterium sp. FD1 (see 2 papers)
    56% identity, 98% coverage of query (452 bits)

FDM_PSEPU / Q52078 Formaldehyde dismutase; EC 1.2.98.1 from Pseudomonas putida (Arthrobacter siderocapsulatus) (see 2 papers)
    59% identity, 99% coverage of query (438 bits)

2dphA / Q52078 Crystal structure of formaldehyde dismutase
    59% identity, 99% coverage of query (436 bits)

YbdR / b0608 putative Zn2+-dependent alcohol dehydrogenase YbdR from Escherichia coli K-12 substr. MG1655 (see paper)
    34% identity, 94% coverage of query (176 bits)

ADHB_BACSU / O06012 Uncharacterized zinc-type alcohol dehydrogenase-like protein AdhB; EC 1.-.-.- from Bacillus subtilis (strain 168) (see paper)
    34% identity, 95% coverage of query (159 bits)

YHG1_SCHPO / Q9P6I8 Zinc-type alcohol dehydrogenase-like protein C1198.01; EC 1.-.-.- from Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast) (see paper)
    31% identity, 94% coverage of query (147 bits)

B2ZRE3 alcohol dehydrogenase (EC 1.1.1.1) from Thermus sp. (see paper)
    30% identity, 94% coverage of query (147 bits)

4cpdA / B2ZRE3 Alcohol dehydrogenase tadh from thermus sp. Atn1
    30% identity, 94% coverage of query (146 bits)

Build an alignment

Build an alignment for PfGW456L13_1122 and 14 homologs with ≥ 30% identity

Select sequences

Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

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Change minimum %identity:

Additional hits (identity < 30%)

Q9HMB6 alcohol dehydrogenase [NAD(P)+] (EC 1.1.1.71) from Halobacterium sp. (see paper)
    29% identity, 94% coverage of query (137 bits)

D4GP73 alcohol dehydrogenase [NAD(P)+] (EC 1.1.1.71) from Haloferax volcanii (see paper)
    30% identity, 94% coverage of query (128 bits)

Q5V676 alcohol dehydrogenase [NAD(P)+] (EC 1.1.1.71) from Haloarcula marismortui (see paper)
    29% identity, 94% coverage of query (125 bits)

3gfbA / Q5JI69 L-threonine dehydrogenase (tktdh) from the hyperthermophilic archaeon thermococcus kodakaraensis (see paper)
    28% identity, 90% coverage of query (97.4 bits)

TDH_THEKO / Q5JI69 L-threonine 3-dehydrogenase; TDH; L-threonine dehydrogenase; EC 1.1.1.103 from Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1) (Pyrococcus kodakaraensis (strain KOD1)) (see 2 papers)
Q5JI69 L-threonine 3-dehydrogenase (EC 1.1.1.103) from Thermococcus kodakarensis (see 2 papers)
    28% identity, 90% coverage of query (97.4 bits)

Q3C2L6 L-iditol 2-dehydrogenase (EC 1.1.1.14) from Solanum lycopersicum (see paper)
    27% identity, 75% coverage of query (94.4 bits)

1vj0A / Q9WYR7 Crystal structure of alcohol dehydrogenase (tm0436) from thermotoga maritima at 2.00 a resolution
    27% identity, 84% coverage of query (68.9 bits)

6ffxA Crystal structure of r. Ruber adh-a, mutant f43h (see paper)
    27% identity, 87% coverage of query (64.7 bits)

5o9dA Crystal structure of r. Ruber adh-a, mutant y294f, w295a, y54f, f43h, h39y
    27% identity, 87% coverage of query (64.3 bits)

6ljhA Crystal structure of alcohol dehydrogenase 1 from artemisia annua in complex with NAD+
    27% identity, 73% coverage of query (61.6 bits)

7cyiD / A0A2U1Q018 Crystal structure of alcohol dehydrogenase 1 from artemisia annua
    27% identity, 73% coverage of query (61.6 bits)

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by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory