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Searching for up to 100 curated homologs for PfGW456L13_1387 FitnessBrowser__pseudo13_GW456_L13:PfGW456L13_1387 (549 a.a.)

Found high-coverage hits (≥70%) to 8 curated proteins.

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

5ez3B / Q8YC61 Crystal structure acyl-coa dehydrogenase from brucella melitensis in complex with fad
    51% identity, 95% coverage of query (471 bits)

3u33A / P33224 Crystal structure of the e. Coli adaptive response protein aidb in the space group p3(2) (see paper)
    45% identity, 91% coverage of query (405 bits)

AidB / b4187 putative acyl-CoA dehydrogenase AidB (EC 1.3.8.4) from Escherichia coli K-12 substr. MG1655 (see 6 papers)
AidB / P33224 isovaleryl-CoA dehydrogenase and DNA-binding transcriptional repressor (EC 1.3.8.4) from Escherichia coli (strain K12) (see 13 papers)
AIDB_ECOLI / P33224 Putative acyl-CoA dehydrogenase AidB; EC 1.3.99.- from Escherichia coli (strain K12) (see 4 papers)
    45% identity, 91% coverage of query (405 bits)

4y9jB / Q9XWZ2 Crystal structure of caenorhabditis elegans acdh-11 in complex with c11-coa (see paper)
    30% identity, 92% coverage of query (180 bits)

ACD11_CAEEL / Q9XWZ2 Acyl-CoA dehydrogenase family member 11; EC 1.3.99.- from Caenorhabditis elegans (see paper)
    30% identity, 92% coverage of query (180 bits)

Build an alignment

Build an alignment for PfGW456L13_1387 and 5 homologs with ≥ 30% identity

Select sequences

Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

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Change minimum %identity:

Additional hits (identity < 30%)

FADE5_MYCS2 / Q3L887 Broad-specificity linear acyl-CoA dehydrogenase FadE5; Long-chain-acyl-CoA dehydrogenase; Medium-chain-acyl-CoA dehydrogenase; Short-chain-acyl-CoA dehydrogenase; EC 1.3.8.8; EC 1.3.8.7; EC 1.3.8.1 from Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155) (Mycobacterium smegmatis) (see paper)
    22% identity, 80% coverage of query (75.1 bits)

FADE5_MYCTU / O53666 Broad-specificity linear acyl-CoA dehydrogenase FadE5; Long-chain-acyl-CoA dehydrogenase; Medium-chain-acyl-CoA dehydrogenase; Short-chain-acyl-CoA dehydrogenase; EC 1.3.8.8; EC 1.3.8.7; EC 1.3.8.1 from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) (see paper)
    24% identity, 80% coverage of query (70.5 bits)

6kseA / O53666 Crystal structure of e447a acyl-coa dehydrogenase fade5 mutant from mycobacteria tuberculosisin complex with c18coa (see paper)
    23% identity, 72% coverage of query (65.5 bits)

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by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory