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Searching for up to 100 curated homologs for PfGW456L13_1567 FitnessBrowser__pseudo13_GW456_L13:PfGW456L13_1567 (268 a.a.)

Found high-coverage hits (≥70%) to 14 curated proteins.

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

PotI / b0857 putrescine ABC transporter membrane subunit PotI (EC 7.6.2.11; EC 7.6.2.16) from Escherichia coli K-12 substr. MG1655 (see 2 papers)
PotI / P0AFL1 putrescine ABC transporter membrane subunit PotI (EC 7.6.2.11) from Escherichia coli (strain K12) (see paper)
POTI_ECOLI / P0AFL1 Putrescine transport system permease protein PotI from Escherichia coli (strain K12) (see 3 papers)
TC 3.A.1.11.2 / P0AFL1 PotI aka B0857, component of Putrescine porter from Escherichia coli (see 5 papers)
    40% identity, 90% coverage of query (162 bits)

PotC / b1124 spermidine preferential ABC transporter membrane subunit PotC (EC 7.6.2.11; EC 7.6.2.16) from Escherichia coli K-12 substr. MG1655 (see 4 papers)
PotC / P0AFK6 spermidine preferential ABC transporter membrane subunit PotC (EC 7.6.2.11) from Escherichia coli (strain K12) (see 2 papers)
POTC_ECOLI / P0AFK6 Spermidine/putrescine transport system permease protein PotC from Escherichia coli (strain K12) (see paper)
TC 3.A.1.11.1 / P0AFK6 Spermidine/putrescine transport system permease protein PotC aka B1124, component of Polyamine (putrescine/spermidine) uptake porter from Escherichia coli (see 5 papers)
potC spermidine/putrescine ABC transporter, permease protein PotC from Escherichia coli K12 (see paper)
    36% identity, 93% coverage of query (157 bits)

TC 3.A.1.11.7 / Q97Q44 Spermidine/putrescine ABC transporter, permease protein, component of The spermidine/putrescine uptake porter, PotABCD from Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4)
    30% identity, 91% coverage of query (132 bits)

G7SFQ8 ABC-type polyamine transporter (subunit 2/4) (EC 7.6.2.11) from Streptococcus suis (see paper)
    30% identity, 91% coverage of query (131 bits)

TC 3.A.1.11.3 / Q44381 MotD, component of Mannopine porter from Agrobacterium tumefaciens (see paper)
    33% identity, 93% coverage of query (112 bits)

TC 3.A.1.11.6 / Q1M7Q2 Putative spermidine/putrescine transport system ABC transporter permease component, component of The γ-aminobutyrate (GABA) uptake system, GtsABCD from Rhizobium leguminosarum bv. viciae (strain 3841) (see paper)
    31% identity, 80% coverage of query (101 bits)

TC 3.A.1.11.4 / O70071 ChtK, component of Chrysopine porter
    30% identity, 90% coverage of query (93.6 bits)

YdcV / b1443 putative ABC transporter membrane subunit YdcV from Escherichia coli K-12 substr. MG1655 (see 4 papers)
ydcV / P0AFR9 putative ABC transporter membrane subunit YdcV from Escherichia coli (strain K12) (see 4 papers)
YDCV_ECOLI / P0AFR9 Inner membrane ABC transporter permease protein YdcV from Escherichia coli (strain K12) (see 2 papers)
    31% identity, 90% coverage of query (87.8 bits)

PHNV_SALTY / P96065 Putative 2-aminoethylphosphonate transport system permease protein PhnV from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (see paper)
TC 3.A.1.11.5 / P96065 PhnV aka STM0426, component of 2-aminoethyl phosphonate porter from Salmonella typhimurium (see 2 papers)
    31% identity, 91% coverage of query (79.7 bits)

TC 3.A.1.11.7 / Q97Q43 Spermidine/putrescine ABC transporter, permease protein, component of The spermidine/putrescine uptake porter, PotABCD from Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4)
    31% identity, 75% coverage of query (71.2 bits)

Build an alignment

Build an alignment for PfGW456L13_1567 and 10 homologs with ≥ 30% identity

Select sequences

Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

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Change minimum %identity:

Additional hits (identity < 30%)

TC 3.A.1.20.1 / O54371 BitE, component of The iron transporter, BitABCDEF from Treponema hyodysenteriae (Serpulina hyodysenteriae) (see paper)
    25% identity, 91% coverage of query (70.1 bits)

A0A0K2E5X6 ABC-type polyamine transporter (subunit 3/4) (EC 7.6.2.11) from Streptococcus suis (see paper)
    28% identity, 75% coverage of query (62.8 bits)

SM_b21105 ABC transporter for L-Fucose, permease component 2 from Sinorhizobium meliloti 1021
    25% identity, 79% coverage of query (58.2 bits)

TC 3.A.1.10.3 / P71338 FbpB, component of Ferric iron (Fe3+) porter, FbpABC or HitABC (selective for trivalent cations, Fe3+, Ga3+ and Al3+) from Haemophilus influenzae (see 2 papers)
    23% identity, 79% coverage of query (45.4 bits)

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by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory