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Searching for up to 100 curated homologs for PfGW456L13_2444 FitnessBrowser__pseudo13_GW456_L13:PfGW456L13_2444 (330 a.a.)

Found high-coverage hits (≥70%) to 8 curated proteins.

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

E4NI20 diaminopimelate epimerase (EC 5.1.1.7) from Kitasatospora setae (see paper)
    31% identity, 74% coverage of query (67.4 bits)

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Build an alignment for PfGW456L13_2444 and 1 homologs with ≥ 30% identity

Select sequences

Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

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Change minimum %identity:

Additional hits (identity < 30%)

DapF / b3809 diaminopimelate epimerase (EC 5.1.1.7) from Escherichia coli K-12 substr. MG1655 (see 3 papers)
dapF / P0A6K1 diaminopimelate epimerase (EC 5.1.1.7) from Escherichia coli (strain K12) (see 12 papers)
DAPF_ECOLI / P0A6K1 Diaminopimelate epimerase; DAP epimerase; PLP-independent amino acid racemase; EC 5.1.1.7 from Escherichia coli (strain K12) (see 6 papers)
    29% identity, 73% coverage of query (62.0 bits)

DAPF_HAEIN / P44859 Diaminopimelate epimerase; DAP epimerase; PLP-independent amino acid racemase; EC 5.1.1.7 from Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) (see 4 papers)
2gkeA / P44859 Crystal structure of diaminopimelate epimerase in complex with an irreversible inhibitor ll-azidap (see paper)
    25% identity, 73% coverage of query (59.3 bits)

2gkjA Crystal structure of diaminopimelate epimerase in complex with an irreversible inhibitor dl-azidap
    25% identity, 73% coverage of query (59.3 bits)

3ejxD / Q9LFG2 Crystal structure of diaminopimelate epimerase from arabidopsis thaliana in complex with ll-azidap (see paper)
    24% identity, 75% coverage of query (52.8 bits)

3ekmA Crystal structure of diaminopimelate epimerase form arabidopsis thaliana in complex with irreversible inhibitor dl-azidap
    24% identity, 75% coverage of query (52.8 bits)

DAPF_ARATH / Q9LFG2 Diaminopimelate epimerase, chloroplastic; DAP epimerase; EC 5.1.1.7 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
Q9LFG2 diaminopimelate epimerase (EC 5.1.1.7) from Arabidopsis thaliana (see paper)
    24% identity, 75% coverage of query (52.0 bits)

DAPF_BACAN / Q81XR2 Diaminopimelate epimerase; DAP epimerase; PLP-independent amino acid racemase; EC 5.1.1.7 from Bacillus anthracis
    23% identity, 75% coverage of query (49.3 bits)

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by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory