Sites on a Tree

 

Searching for up to 100 curated homologs for PfGW456L13_2530 FitnessBrowser__pseudo13_GW456_L13:PfGW456L13_2530 (298 a.a.)

Found high-coverage hits (≥70%) to 67 curated proteins.

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

tesB / Q9FAE3 3,4-dihydroxy-9,10-secoandrosta-1,3,5(10)-triene-9,17-dione 4,5-dioxygenase (EC 1.13.11.25) from Comamonas testosteroni (see 3 papers)
    56% identity, 100% coverage of query (327 bits)

bphC1 / BAA25603.1 2,3-dihydroxybiphenyl 1,2-dioxygenase from Rhodococcus erythropolis (see paper)
    44% identity, 98% coverage of query (241 bits)

hsaC / Q9KWQ5 3,4-dihydroxy-9,10-secoandrosta-1,3,5(10)-triene-9,17-dione 4,5-dioxygenase monomer (EC 1.13.11.25) from Rhodococcus jostii (strain RHA1) (see 2 papers)
HSAC_RHOJR / Q9KWQ5 Iron-dependent extradiol dioxygenase; EC 1.13.11.25 from Rhodococcus jostii (strain RHA1) (see 2 papers)
bphC5 / BAA98137.1 2,3-dihydroxybiphenyl 1,2-dioxygenase from Rhodococcus jostii RHA1 (see paper)
    46% identity, 100% coverage of query (240 bits)

bphC7 / BAA25618.1 2,3-dihydroxybiphenyl 1,2-dioxygenase from Rhodococcus erythropolis (see paper)
    42% identity, 98% coverage of query (235 bits)

bphC2 / BAA98133.1 2,3-dihydroxybiphenyl 1,2-dioxygenase from Rhodococcus jostii RHA1 (see paper)
    44% identity, 98% coverage of query (235 bits)

bphC6 / BAA25615.1 2,3-dihydroxybiphenyl 1,2-dioxygenase from Rhodococcus erythropolis (see paper)
    44% identity, 100% coverage of query (234 bits)

bphC7 / BAF48137.1 2, 3-dihydroxybiphenyl 1, 2-dioxygenase from Rhodococcus rhodochrous (see paper)
    42% identity, 98% coverage of query (229 bits)

2zi8A / P9WNW7 Crystal structure of the hsac extradiol dioxygenase from m. Tuberculosis in complex with 3,4-dihydroxy-9,10-seconandrost-1,3, 5(10)-triene-9,17-dione (dhsa) (see paper)
    44% identity, 99% coverage of query (228 bits)

hsaC / P9WNW7 3,4-dihydroxy-9,10-secoandrosta-1,3,5(10)-triene-9,17-dione 4,5-dioxygenase monomer (EC 1.13.11.25) from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) (see 3 papers)
HSAC_MYCTU / P9WNW7 Iron-dependent extradiol dioxygenase; EC 1.13.11.25 from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) (see 3 papers)
    44% identity, 99% coverage of query (227 bits)

Q6QF56 biphenyl-2,3-diol 1,2-dioxygenase (EC 1.13.11.39) from Rhodococcus pyridinivorans (see paper)
    42% identity, 98% coverage of query (226 bits)

bphC / A0A097SRG2 biphenyl-2,3-diol 1,2-dioxygenase (EC 1.13.11.39) from Cupriavidus sp. WS (see paper)
    42% identity, 98% coverage of query (223 bits)

F2X5L9 biphenyl-2,3-diol 1,2-dioxygenase (EC 1.13.11.39) from uncultured bacterium (see paper)
    42% identity, 98% coverage of query (221 bits)

BPHC_PARXL / P47228 Biphenyl-2,3-diol 1,2-dioxygenase; 2,3-dihydroxybiphenyl dioxygenase; DHBD; 23OHBP oxygenase; EC 1.13.11.39 from Paraburkholderia xenovorans (strain LB400) (see paper)
B3VTK1 biphenyl-2,3-diol 1,2-dioxygenase (EC 1.13.11.39) from Achromobacter sp. (see paper)
bphC / GB|ABE37053.1 biphenyl-2,3-diol 1,2-dioxygenase; EC 1.13.11.39 from Burkholderia xenovorans LB400 (see 5 papers)
BphC / CAA46910.1 Biphenyl-2,3-diol-1,2 dioxygenase from Pseudomonas sp (see paper)
    43% identity, 98% coverage of query (220 bits)

Q52032 biphenyl-2,3-diol 1,2-dioxygenase (EC 1.13.11.39) from Pseudomonas putida (see 3 papers)
    43% identity, 98% coverage of query (219 bits)

1kmyA / P47228 Crystal structure of 2,3-dihydroxybiphenyl 1,2-dioxygenase complexed with 2,3-dihydroxybiphenyl under anaerobic condition (see paper)
    43% identity, 97% coverage of query (218 bits)

1lkdA Crystal structure of 2,3-dihydroxybiphenyl 1,2-dioxygenase (dhbd) complexed with 2',6'-dicl dihydroxybiphenyl (dhb)
    43% identity, 97% coverage of query (218 bits)

1lgtA Crystal structure of 2,3-dihydroxybiphenyl 1,2-dioxygenase (dhbd) complexed with 2'-cl dihydroxybiphenyl (dhb)
    43% identity, 97% coverage of query (218 bits)

1hanA Crystal structure of the biphenyl-cleaving extradiol dioxygenase from a pcb-degrading pseudomonad
    43% identity, 97% coverage of query (218 bits)

1knfA Crystal structure of 2,3-dihydroxybiphenyl 1,2-dioxygenase complexed with 3-methyl catechol under anaerobic condition
    43% identity, 97% coverage of query (218 bits)

1kndA Crystal structure of 2,3-dihydroxybiphenyl 1,2-dioxygenase complexed with catechol under anaerobic condition
    43% identity, 97% coverage of query (218 bits)

bphC1 / BAF48123.1 2, 3-dihydroxybiphenyl 1, 2-dioxygenase from Rhodococcus rhodochrous (see paper)
    40% identity, 98% coverage of query (212 bits)

A9QT35 biphenyl-2,3-diol 1,2-dioxygenase (EC 1.13.11.39) from Dyella ginsengisoli (see paper)
    41% identity, 98% coverage of query (207 bits)

bphC2 / BAF48128.1 2, 3-dihydroxybiphenyl 1, 2-dioxygenase from Rhodococcus rhodochrous (see paper)
    40% identity, 100% coverage of query (205 bits)

bphC4 / BAD10896.1 2, 3-dihydroxybiphenyl 1, 2-dioxygenase from Rhodococcus rhodochrous (see paper)
    38% identity, 98% coverage of query (196 bits)

1eilA / P17297 2,3-dihydroxybiphenyl-1,2-dioxygenase (see paper)
    40% identity, 97% coverage of query (195 bits)

1eirA 2,3-dihydroxybiphenyl-1,2-dioxygenase
    40% identity, 97% coverage of query (195 bits)

1kw8B Crystal structure of bphc-2,3-dihydroxybiphenyl-no complex
    40% identity, 97% coverage of query (195 bits)

1kw3B Crystal structure of 2,3-dihydroxybiphenyal dioxygenase (bphc) at 1.45 a resolution
    40% identity, 97% coverage of query (195 bits)

bphC3 / BAA25608.1 2,3-dihydroxybiphenyl 1,2-dioxygenase from Rhodococcus erythropolis (see paper)
bpdE / AAB07755.1 2,3-dihydroxybiphenyl 1,2-dioxygenase from Rhodococcus sp. M5 (see paper)
    40% identity, 99% coverage of query (190 bits)

6l3wA Crystal structure of bphc, a halotolerant catechol dioxygenase (see paper)
    37% identity, 97% coverage of query (181 bits)

bphC1 / Q0S034 2,3-dihydroxybiphenyl 1,2-dioxygenase monomer (EC 1.13.11.39) from Rhodococcus jostii (strain RHA1) (see 2 papers)
    36% identity, 100% coverage of query (179 bits)

Q8KRD4 biphenyl-2,3-diol 1,2-dioxygenase (EC 1.13.11.39) from Delftia acidovorans (see paper)
    37% identity, 100% coverage of query (179 bits)

Q53126 biphenyl-2,3-diol 1,2-dioxygenase (EC 1.13.11.39) from Rhodococcus sp. (see 2 papers)
bphC / BAA06872.1 2,3-dihydroxybiphenyl dioxygenase from Rhodococcus jostii RHA1 (see paper)
    36% identity, 100% coverage of query (179 bits)

bphC5 / BAA25614.1 2,3-dihydroxybiphenyl 1,2-dioxygenase from Rhodococcus erythropolis (see paper)
    38% identity, 97% coverage of query (179 bits)

bphC / BAM76241.1 2,3-dihydroxybiphenyl 1,2-dioxygenase from Janibacter sp. TYM3221 (see paper)
    38% identity, 98% coverage of query (178 bits)

bphC8 / BAF48489.1 2, 3-dihydroxybiphenyl 1, 2-dioxygenase from Rhodococcus rhodochrous (see 2 papers)
    35% identity, 97% coverage of query (175 bits)

hbpC / O06646 2,3-dihydroxybiphenyl-1,2-dioxygenase [multifunctional] (EC 1.13.11.39) from Pseudomonas nitroreducens (see paper)
    37% identity, 97% coverage of query (166 bits)

edoA / AAC18907.1 extradiol dioxygenase from Rhodococcus rhodochrous (see paper)
    35% identity, 97% coverage of query (164 bits)

bphC4 / BAA25611.1 2,3-dihydroxybiphnyl 1,2-dioxygenase from Rhodococcus erythropolis (see paper)
    35% identity, 97% coverage of query (162 bits)

2wl9A / Q6REQ5 Crystal structure of catechol 2,3-dioxygenase (see paper)
    34% identity, 88% coverage of query (156 bits)

etbC / BAA11181.1 ring cleavage dioxygenase from Rhodococcus sp (see paper)
etbC / BAA18940.1 2,3-dihydroxybiphenyl 1,2-dioxygenase from Rhodococcus sp (see 2 papers)
    34% identity, 88% coverage of query (156 bits)

2wl3A Crystal structure of catechol 2,3-dioxygenase
    34% identity, 88% coverage of query (156 bits)

2wl9B Crystal structure of catechol 2,3-dioxygenase
    34% identity, 88% coverage of query (155 bits)

ditC / AAD21065.1 aromatic diterpenoid extradiol ring-cleavage dioygenase from Pseudomonas abietaniphila (see 4 papers)
    33% identity, 98% coverage of query (149 bits)

bphC / AAB03689.1 2,3-dihydroxybiphenyl 1,2-dioxygenase from Sphingobium yanoikuyae (see paper)
    34% identity, 88% coverage of query (148 bits)

NSAC_SPHXE / P74836 1,2-dihydroxynaphthalene dioxygenase; 1,2-DHN dioxygenase; DHNDO; EC 1.13.11.56 from Sphingobium xenophagum (see 2 papers)
P74836 1,2-dihydroxynaphthalene dioxygenase (EC 1.13.11.56) from Sphingobium xenophagum (see paper)
    34% identity, 88% coverage of query (144 bits)

nahC / Q7B7H7 1,2-dihydroxynaphthalene dioxygenase subunit (EC 1.13.11.56) from Pseudomonas putida (see paper)
NAHC_PSEU8 / P0A108 1,2-dihydroxynaphthalene dioxygenase; 1,2-DHN dioxygenase; DHNDO; 1,2-dihydroxynaphthalene oxygenase; EC 1.13.11.56 from Pseudomonas sp. (strain C18)
    32% identity, 89% coverage of query (136 bits)

2ehzA / P0A108 Anaerobic crystal structure analysis of 1,2-dihydroxynaphthalene dioxygenase from pseudomonas sp. Strain c18 complexed with 4- methylcatechol
    32% identity, 89% coverage of query (136 bits)

2ei3A Anaerobic crystal structure analysis of the 1,2-dihydroxynaphthalene dioxygenase from pseudomonas sp. Strain c18 complexes with 2,3- dihydroxybiphenyl
    32% identity, 89% coverage of query (136 bits)

NAHC1_PSEPU / P11861 1,2-dihydroxynaphthalene dioxygenase; 1,2-DHN dioxygenase; DHNDO; 1,2-dihydroxynaphthalene oxygenase; EC 1.13.11.56 from Pseudomonas putida (Arthrobacter siderocapsulatus) (see paper)
nahC / BAE92160.1 1, 2-dihydroxynaphthalene dioxygenase NahC from Pseudomonas putida (see 2 papers)
    32% identity, 89% coverage of query (135 bits)

2ei1A Anaerobic crystal structure analysis of the 1,2-dihydroxynaphthalene dioxygeanse of pseudomonas sp. Strain c18 complexes to 1,2- dihydroxynaphthalene
    32% identity, 89% coverage of query (135 bits)

2ei0A Anaerobic crystal structure analysis of 1,2-dihydroxynaphthalene dioxygenase from pseudomonas sp. Strain c18 complexed with 3,4- dihydroxybiphenyl
    32% identity, 89% coverage of query (135 bits)

3vb0A Crystal structure of 2,2',3-trihydroxybiphenyl 1,2-dioxygenase from dibenzofuran-degrading sphingomonas wittichii strain rw1
    30% identity, 98% coverage of query (109 bits)

Build an alignment

Build an alignment for PfGW456L13_2530 and 53 homologs with ≥ 30% identity

Select sequences

Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

Or download the sequences

Change minimum %identity:

Additional hits (identity < 30%)

dhbA / I6X9J4 2,3-dihydroxybenzoate 3,4-dioxygenase (EC 1.13.11.14) from Pseudomonas putida (see paper)
    26% identity, 89% coverage of query (81.6 bits)

cmtC / Q51976 2,3-dihydroxy-p-cumate 3,4-dioxygenase (EC 1.13.11.14) from Pseudomonas putida (see 4 papers)
cmtC / AAB62287.1 2,3-dihydroxy-p-cumate-3,4-dioxygenase from Pseudomonas putida (see 3 papers)
    25% identity, 88% coverage of query (76.6 bits)

3b59A / Q2GAG3 Crystal structure of the mn(ii)-bound glyoxalase from novosphingobium aromaticivorans
    25% identity, 93% coverage of query (65.1 bits)

bphC3 / BAA98134.1 2,3-dihydroxybiphenyl 1,2-dioxygenase from Rhodococcus jostii RHA1 (see paper)
    25% identity, 92% coverage of query (59.3 bits)

Q842G7 catechol 2,3-dioxygenase (EC 1.13.11.2) from Pseudomonas putida (see paper)
    25% identity, 87% coverage of query (59.3 bits)

3hq0B Crystal structure analysis of the 2,3-dioxygenase lapb from pseudomonas in complex with a product
    24% identity, 87% coverage of query (58.5 bits)

3hpyA Crystal structure analysis of the 2,3-dioxygenase lapb from pseudomonas in the complex with 4-methylcatechol
    24% identity, 87% coverage of query (58.5 bits)

3hpvA / Q7WYF5 Crystal structure analysis of the 2,3-dioxygenase lapb from pseudomonas sp. Kl28 (see paper)
    24% identity, 87% coverage of query (58.2 bits)

Q7WYF5 catechol 2,3-dioxygenase (EC 1.13.11.2) from Pseudomonas sp. (see paper)
    24% identity, 87% coverage of query (58.2 bits)

bphC5 / BAD10901.1 2, 3-dihydroxybiphenyl 1, 2-dioxygenase from Rhodococcus rhodochrous (see paper)
    23% identity, 92% coverage of query (53.1 bits)

xylE / P06622 subunit of catechol 2,3-dioxygenase (EC 1.13.11.2) from Pseudomonas putida (see 2 papers)
P06622 catechol 2,3-dioxygenase (EC 1.13.11.2) from Pseudomonas putida (see 3 papers)
Q7BH44 catechol 2,3-dioxygenase (EC 1.13.11.2) from Pseudomonas sp. (see paper)
T1WIF8 catechol 2,3-dioxygenase (EC 1.13.11.2) from Pseudomonas sp. HA14 (see paper)
1mpyA / P06622 Structure of catechol 2,3-dioxygenase (metapyrocatechase) from pseudomonas putida mt-2 (see paper)
    22% identity, 89% coverage of query (50.8 bits)

T1WJ05 catechol 2,3-dioxygenase (EC 1.13.11.2) from Pseudomonas sp. HA12 (see paper)
    22% identity, 89% coverage of query (50.8 bits)

nahH / BAE92167.1 catechol-2, 3-dioxygenase NahH from Pseudomonas putida (see 2 papers)
    20% identity, 89% coverage of query (47.8 bits)

Q8KLV4 catechol 2,3-dioxygenase (EC 1.13.11.2) from Pseudomonas stutzeri (see paper)
cdo / CAD43168.1 catechol 2,3-dioxygenase from Pseudomonas stutzeri (see paper)
    22% identity, 87% coverage of query (46.2 bits)

Or start over

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory