Searching for up to 100 curated homologs for RR42_RS05085 FitnessBrowser__Cup4G11:RR42_RS05085 (140 a.a.)

Found high-coverage hits (≥70%) to 12 curated proteins.

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

nbaF / Q83V27 2-aminomuconate deaminase (EC 3.5.99.5) from Pseudomonas fluorescens (see paper)
    74% identity, 100% coverage of query (219 bits)

amnD / Q9KWS2 2-aminomuconate deaminase monomer (EC 3.5.99.5) from Pseudomonas sp. (see 2 papers)
AMND_PSESP / Q9KWS2 2-aminomuconate deaminase; EC 3.5.99.5 from Pseudomonas sp. (see 2 papers)
    68% identity, 96% coverage of query (194 bits)

RIDA_PYRFU / Q8U308 2-iminobutanoate/2-iminopropanoate deaminase; Enamine/imine deaminase; EC 3.5.99.10 from Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) (see paper)
Q8U308 2-iminobutanoate/2-iminopropanoate deaminase (EC 3.5.99.10) from Pyrococcus furiosus (see paper)
    39% identity, 88% coverage of query (90.9 bits)

Q973T6 2-iminobutanoate/2-iminopropanoate deaminase (EC 3.5.99.10) from Sulfurisphaera tokodaii (see paper)
    37% identity, 94% coverage of query (73.6 bits)

MMF1_YEAST / P40185 Protein MMF1, mitochondrial; Isoleucine biosynthesis and maintenance of intact mitochondria 1; Maintenance of mitochondrial function 1 from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) (see 3 papers)
    30% identity, 95% coverage of query (64.3 bits)

RIDA_ARATH / Q94JQ4 Reactive Intermediate Deaminase A, chloroplastic; 2-iminobutanoate/2-iminopropanoate deaminase; EC 3.5.99.10 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
Q94JQ4 2-iminobutanoate/2-iminopropanoate deaminase (EC 3.5.99.10) from Arabidopsis thaliana (see paper)
    30% identity, 85% coverage of query (62.8 bits)

ahdB / B5U8R1 2-amino-5-carboxymuconic 6-semialdehyde deaminase subunit from Bordetella sp. 10d (see paper)
    34% identity, 81% coverage of query (62.0 bits)

HMF1_YEAST / P40037 Protein HMF1; High dosage growth inhibitor; Homologous mitochondrial matrix factor 1 from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) (see 2 papers)
    30% identity, 71% coverage of query (59.7 bits)

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Build an alignment for RR42_RS05085 and 8 homologs with ≥ 30% identity

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Additional hits (identity < 30%)

MMF1_SCHPO / O43003 Protein mmf1, mitochondrial; Isoleucine biosynthesis and maintenance of intact mitochondria 1; Maintenance of mitochondrial function 1 from Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast) (see paper)
mmf1 / RF|NP_596433.1 YjgF family protein Mmf1 from Schizosaccharomyces pombe (see 2 papers)
    27% identity, 97% coverage of query (59.3 bits)

Q880Z0 2-iminobutanoate/2-iminopropanoate deaminase (EC 3.5.99.10) from Pseudomonas syringae pv. tomato (see paper)
    34% identity, 85% coverage of query (58.9 bits)

YcdK / b1010 putative aminoacrylate peracid reductase RutC from Escherichia coli K-12 substr. MG1655 (see 7 papers)
rutC / P0AFQ5 3-aminoacrylate deaminase from Escherichia coli (strain K12) (see 8 papers)
RUTC_ECOLI / P0AFQ5 3-aminoacrylate deaminase RutC; 3-AA deaminase; EC 3.5.-.- from Escherichia coli (strain K12) (see 5 papers)
RUTC_ECOL6 / P0AFQ6 3-aminoacrylate deaminase RutC; 3-AA deaminase; EC 3.5.-.- from Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) (see paper)
    27% identity, 90% coverage of query (53.5 bits)

YjgH / b4248 RutC family protein YjgH from Escherichia coli K-12 substr. MG1655 (see 2 papers)
yjgH / RF|NP_418669 UPF0076 protein yjgH from Escherichia coli K12 (see paper)
    30% identity, 86% coverage of query (46.2 bits)

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