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Searching for up to 100 curated homologs for RR42_RS05960 FitnessBrowser__Cup4G11:RR42_RS05960 (300 a.a.)

Found high-coverage hits (≥70%) to 2 curated proteins.

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

TC 2.A.7.3.58 / Q31PG5 Possible transporter of polar amino acids including glutamate, glutamine and aspartate, DmeA. It complements a sepJ mutation in Anabaena (TC# 2.A.7.23.2), and SepJ complements a dmeA mutation. Alternatively, and less likely, it could be an activator of an ABC transporter catalyzing uptake of these amino acids from Synechococcus elongatus (strain PCC 7942)
    30% identity, 74% coverage of query (56.2 bits)

Build an alignment

Build an alignment for RR42_RS05960 and 1 homologs with ≥ 30% identity

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Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

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Additional hits (identity < 30%)

YijE / b3943 cystine exporter from Escherichia coli K-12 substr. MG1655 (see 5 papers)
yijE / P0ABT8 cystine exporter from Escherichia coli (strain K12) (see 5 papers)
YIJE_ECOLI / P0ABT8 Probable cystine transporter YijE from Escherichia coli (strain K12) (see 2 papers)
TC 2.A.7.3.26 / P0ABT9 Cystine exporter, YijE, of 301 aas and 10 TMSs from Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) (see paper)
    29% identity, 82% coverage of query (49.3 bits)

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by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory