Sites on a Tree

 

Searching for up to 100 curated homologs for RR42_RS06405 FitnessBrowser__Cup4G11:RR42_RS06405 (120 a.a.)

Found high-coverage hits (≥70%) to 3 curated proteins.

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

PS417_08860 small component of pyruvate transporter (yjcH-like) from Pseudomonas simiae WCS417
    42% identity, 76% coverage of query (79.3 bits)

AZOBR_RS02935 small component of pyruvate transporter (yjcH-like) from Azospirillum brasilense Sp245
    42% identity, 76% coverage of query (73.9 bits)

b4068 required for glycolate transport, with actP from Escherichia coli BW25113
YjcH / b4068 DUF485 domain-containing inner membrane protein YjcH from Escherichia coli K-12 substr. MG1655 (see 2 papers)
    41% identity, 72% coverage of query (73.6 bits)

Build an alignment

Build an alignment for RR42_RS06405 and 3 homologs with ≥ 30% identity

Select sequences

Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

Or download the sequences

Change minimum %identity:

No additional hits (below 30% identity) were found

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by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory