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Searching for up to 100 curated homologs for RR42_RS16905 FitnessBrowser__Cup4G11:RR42_RS16905 (420 a.a.)

Found high-coverage hits (≥70%) to 22 curated proteins.

Removed hits that are identical to the query, leaving 21

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

Ac3H11_2550 Imidazolonepropionase (EC 3.5.2.7) from Acidovorax sp. GW101-3H11
    67% identity, 97% coverage of query (561 bits)

Pf6N2E2_3798 Imidazolonepropionase (EC 3.5.2.7) from Pseudomonas fluorescens FW300-N2E2
    62% identity, 94% coverage of query (476 bits)

hutI / O31200 imidazolonepropionase (EC 3.5.2.7) from Pseudomonas putida (see paper)
    62% identity, 94% coverage of query (470 bits)

AO356_09595 Imidazolonepropionase (EC 3.5.2.7) from Pseudomonas fluorescens FW300-N2C3
    62% identity, 94% coverage of query (470 bits)

Pf1N1B4_1579 Imidazolonepropionase (EC 3.5.2.7) from Pseudomonas fluorescens FW300-N1B4
    61% identity, 94% coverage of query (469 bits)

AO353_12280 Imidazolonepropionase (EC 3.5.2.7) from Pseudomonas fluorescens FW300-N2E3
    60% identity, 94% coverage of query (469 bits)

PfGW456L13_317 Imidazolonepropionase (EC 3.5.2.7) from Pseudomonas fluorescens GW456-L13
    61% identity, 94% coverage of query (467 bits)

SO0095 Imidazolonepropionase (EC 3.5.2.7) from Shewanella oneidensis MR-1
    59% identity, 91% coverage of query (464 bits)

HUTI_AGRFC / Q8U8Z6 Imidazolonepropionase; Imidazolone-5-propanoate hydrolase; Imidazolone-5-propionate hydrolase; EC 3.5.2.7 from Agrobacterium fabrum (strain C58 / ATCC 33970) (Agrobacterium tumefaciens (strain C58)) (see paper)
Q8U8Z6 imidazolonepropionase (EC 3.5.2.7) from Agrobacterium tumefaciens (see 2 papers)
    55% identity, 95% coverage of query (416 bits)

PGA1_c36350 Imidazolonepropionase (EC 3.5.2.7) from Phaeobacter inhibens BS107
    57% identity, 91% coverage of query (416 bits)

2gokA / Q8U8Z6 Crystal structure of the imidazolonepropionase from agrobacterium tumefaciens at 1.87 a resolution (see paper)
    55% identity, 95% coverage of query (414 bits)

2puzB Crystal structure of imidazolonepropionase from agrobacterium tumefaciens with bound product n-formimino-l-glutamate
    55% identity, 95% coverage of query (414 bits)

Ga0059261_3964 Imidazolonepropionase (EC 3.5.2.7) from Sphingomonas koreensis DSMZ 15582
    59% identity, 93% coverage of query (397 bits)

2q09A Crystal structure of imidazolonepropionase from environmental sample with bound inhibitor 3-(2,5-dioxo-imidazolidin-4-yl)-propionic acid
    56% identity, 89% coverage of query (397 bits)

2oofA / A0KF84 The crystal structure of 4-imidazolone-5-propanoate amidohydrolase from environmental sample
    56% identity, 89% coverage of query (396 bits)

A0KF84 Imidazolonepropionase; Imidazolone-5-propionate hydrolase; EC 3.5.2.7 from Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / DSM 30187 / BCRC 13018 / CCUG 14551 / JCM 1027 / KCTC 2358 / NCIMB 9240 / NCTC 8049)
    56% identity, 89% coverage of query (394 bits)

SM_b21166 Imidazolonepropionase (EC 3.5.2.7) from Sinorhizobium meliloti 1021
    55% identity, 91% coverage of query (357 bits)

HUTI_BACSU / P42084 Imidazolonepropionase; Imidazolone-5-propionate hydrolase; EC 3.5.2.7 from Bacillus subtilis (strain 168) (see paper)
P42084 imidazolonepropionase (EC 3.5.2.7) from Bacillus subtilis (see 4 papers)
    39% identity, 90% coverage of query (275 bits)

2g3fA / P42084 Crystal structure of imidazolonepropionase complexed with imidazole-4- acetic acid sodium salt, a substrate homologue (see paper)
    39% identity, 90% coverage of query (275 bits)

2bb0A Structure of imidazolonepropionase from bacillus subtilis
    39% identity, 90% coverage of query (275 bits)

Build an alignment

Build an alignment for RR42_RS16905 and 20 homologs with ≥ 30% identity

Select sequences

Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

Or download the sequences

Change minimum %identity:

Additional hits (identity < 30%)

3hpaA Crystal structure of an amidohydrolase gi:44264246 from an evironmental sample of sargasso sea (see paper)
    25% identity, 94% coverage of query (46.6 bits)

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by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory