Searching for up to 100 curated homologs for RR42_RS20620 FitnessBrowser__Cup4G11:RR42_RS20620 (310 a.a.)

Found high-coverage hits (≥70%) to 13 curated proteins.

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

TC 2.A.80.1.4 / S5XTE7 Citrate uptake transporter, substrate binding protein, component of Pmf-dependent citrate uptake porter, TctABC from Corynebacterium glutamicum MB001
    33% identity, 90% coverage of query (171 bits)

Dshi_3123 Tricarboxylate transport protein TctC from Dinoroseobacter shibae DFL-12
    33% identity, 94% coverage of query (165 bits)

HP15_2661 Citrate uptake transporter, substrate-binding component TctC from Marinobacter adhaerens HP15
    31% identity, 94% coverage of query (131 bits)

TC 2.A.80.1.1 / Q9FA46 TctC aka STM2786, component of The tricarboxylate transporter, TctABC from Salmonella enterica (see paper)
    30% identity, 92% coverage of query (127 bits)

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Build an alignment for RR42_RS20620 and 4 homologs with ≥ 30% identity

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Additional hits (identity < 30%)

8hkbA / A0A0K8P8D2 Tpa bound-form of periplasmic terephthalate binding protein (tbp) from ideonella sakaiensis mutant k184d (see paper)
    29% identity, 82% coverage of query (96.3 bits)

iphC / BAH70270.1 periplasmic isophthalate binding receptor from Comamonas sp. E6 (see 2 papers)
    25% identity, 80% coverage of query (80.9 bits)

tphCII / BAE47084.1 periplasmic terephthalate binding receptor from Comamonas sp. E6 (see paper)
    26% identity, 98% coverage of query (69.3 bits)

7ndrD Crystal structure of tphc in an open conformation
    25% identity, 93% coverage of query (68.6 bits)

7ndsA / A0A5N7XFM8 Crystal structure of tphc in a closed conformation (see paper)
    25% identity, 93% coverage of query (68.2 bits)

TC 2.A.80.1.2 / Q5D0X7 Terephthalate permease, component of Terephthalate (TPA) aromatic acid uptake transport system, TpiBA/TphC from Comamonas testosteroni
    28% identity, 79% coverage of query (67.0 bits)

6hkeB / Q6N446 Matc (rpa3494) from rhodopseudomonas palustris with bound malate (see paper)
    25% identity, 71% coverage of query (55.5 bits)

5oeiA / Q6N193 R. Palustris rpa4515 with oxoadipate (see paper)
    25% identity, 73% coverage of query (55.1 bits)

5okuA R. Palustris rpa4515 with adipate
    25% identity, 73% coverage of query (55.1 bits)

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