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Searching for up to 100 curated homologs for RR42_RS21285 FitnessBrowser__Cup4G11:RR42_RS21285 (476 a.a.)

Found high-coverage hits (≥70%) to 9 curated proteins.

Removed hits that are identical to the query, leaving 8

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

Q5F883 L-lactate dehydrogenase (subunit 1/3) (EC from Neisseria gonorrhoeae (see paper)
    63% identity, 99% coverage of query (621 bits)

HP15_4089 L-lactate dehydrogenase, LutB subunit from Marinobacter adhaerens HP15
    63% identity, 97% coverage of query (604 bits)

lutB / O07021 component of an iron-sulfur oxidase linked to L-lactate utilization (EC from Bacillus subtilis (strain 168) (see paper)
LUTB_BACSU / O07021 Lactate utilization protein B from Bacillus subtilis (strain 168) (see paper)
    44% identity, 80% coverage of query (348 bits)

YkgF / b0307 putative amino acid dehydrogenase with NAD(P)-binding domain and ferridoxin-like domain from Escherichia coli K-12 substr. MG1655 (see 4 papers)
    46% identity, 80% coverage of query (348 bits)

LUTB_BACCR / Q81GA4 Lactate utilization protein B from Bacillus cereus (strain ATCC 14579 / DSM 31 / CCUG 7414 / JCM 2152 / NBRC 15305 / NCIMB 9373 / NCTC 2599 / NRRL B-3711) (see paper)
    44% identity, 81% coverage of query (325 bits)

DVU_3033 / Q726S3 quinone-dependent L-lactate dehydrogenase large subunit (EC from Desulfovibrio vulgaris (strain ATCC 29579 / DSM 644 / NCIMB 8303 / VKM B-1760 / Hildenborough) (see 4 papers)
    39% identity, 87% coverage of query (295 bits)

BPHYT_RS26970 L-lactate dehydrogenase, LldF subunit from Burkholderia phytofirmans PsJN
    43% identity, 75% coverage of query (291 bits)

lldG / Q8EGS5 L-lactate dehydrogenase iron-sulfur cluster-binding protein LldF (EC from Shewanella oneidensis (strain MR-1) (see paper)
    40% identity, 79% coverage of query (272 bits)

Build an alignment

Build an alignment for RR42_RS21285 and 8 homologs with ≥ 30% identity

Select sequences

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by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory