Sites on a Tree

 

Searching for up to 100 curated homologs for RR42_RS21290 FitnessBrowser__Cup4G11:RR42_RS21290 (234 a.a.)

Found high-coverage hits (≥70%) to 3 curated proteins.

Removed hits that are identical to the query, leaving 2

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

HP15_4090 L-lactate dehydrogenase, LutC subunit from Marinobacter adhaerens HP15
    43% identity, 94% coverage of query (171 bits)

Q5F884 L-lactate dehydrogenase (subunit 2/3) (EC 1.1.1.27) from Neisseria gonorrhoeae (see paper)
    38% identity, 94% coverage of query (147 bits)

Build an alignment

Build an alignment for RR42_RS21290 and 2 homologs with ≥ 30% identity

Select sequences

Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

Or download the sequences

Change minimum %identity:

No additional hits (below 30% identity) were found

Or start over

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory