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Searching for up to 100 curated homologs for RR42_RS21940 FitnessBrowser__Cup4G11:RR42_RS21940 (389 a.a.)

Found high-coverage hits (≥70%) to 39 curated proteins.

Removed hits that are identical to the query, leaving 38

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

PHHY_PSEAE / P20586 p-hydroxybenzoate hydroxylase; PHBH; 4-hydroxybenzoate 3-monooxygenase; EC 1.14.13.2 from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) (see 7 papers)
1d7lA / P20586 Structure-function correlations of the reaction of reduced nicotinamide analogs with p-hydroxybenzoate hydroxylase substituted with a series of 8-substituted flavins (see paper)
    65% identity, 100% coverage of query (530 bits)

1pbcA Crystal structures of wild-type p-hydroxybenzoate hydroxylase complexed with 4-aminobenzoate, 2,4-dihydroxybenzoate and 2-hydroxy- 4-aminobenzoate and of the try222ala mutant, complexed with 2- hydroxy-4-aminobenzoate. Evidence for a proton channel and a new binding mode of the flavin ring
    65% identity, 100% coverage of query (530 bits)

1iusA P-hydroxybenzoate hydroxylase complexed with 4-aminobenzoate at ph 5.0
    65% identity, 100% coverage of query (530 bits)

1dodA The mobil flavin of 4-oh benzoate hydroxylase: motion of a prosthetic group regulates catalysis
    65% identity, 100% coverage of query (530 bits)

pobA / P00438 p-hydroxybenzoate hydroxylase (EC 1.14.13.2) from Pseudomonas fluorescens (see 2 papers)
PHHY_PSEFL / P00438 p-hydroxybenzoate hydroxylase; PHBH; PHBHase; 4-hydroxybenzoate 3-monooxygenase; EC 1.14.13.2 from Pseudomonas fluorescens (see 13 papers)
    65% identity, 100% coverage of query (529 bits)

1bf3A P-hydroxybenzoate hydroxylase (phbh) mutant with cys 116 replaced by ser (c116s) and arg 42 replaced by lys (r42k), in complex with fad and 4-hydroxybenzoic acid
    65% identity, 100% coverage of query (529 bits)

2phhA The coenzyme analogue adenosine 5-diphosphoribose displaces fad in the active site of p-hydroxybenzoate hydroxylase. An x-ray crystallographic investigation
    65% identity, 100% coverage of query (529 bits)

1pdhA Crystal structure of p-hydroxybenzoate hydroxylase reconstituted with the modified fad present in alcohol oxidase from methylotrophic yeasts: evidence for an arabinoflavin
    65% identity, 100% coverage of query (529 bits)

1k0lA Pseudomonas aeruginosa phbh r220q free of p-ohb
    65% identity, 100% coverage of query (528 bits)

1k0jA Pseudomonas aeruginosa phbh r220q in complex with NADPH and free of p- ohb
    65% identity, 100% coverage of query (528 bits)

pobA / AAA73519.1 4-hydroxybenzoate hydroxylase from Rhizobium leguminosarum (see paper)
    66% identity, 100% coverage of query (526 bits)

1ykjB A45g p-hydroxybenzoate hydroxylase with p-hydroxybenzoate bound
    64% identity, 100% coverage of query (519 bits)

Pf6N2E2_2914 4-hydroxybenzoate 3-monooxygenase (EC 1.14.13.2) from Pseudomonas fluorescens FW300-N2E2
    63% identity, 100% coverage of query (498 bits)

pobA / Q9R9T1 p-hydroxybenzoate hydroxylase (EC 1.14.13.2) from Pseudomonas putida (see paper)
Q9R9T1 4-hydroxybenzoate 3-monooxygenase (EC 1.14.13.2) from Pseudomonas putida (see paper)
    61% identity, 100% coverage of query (486 bits)

6dllB / Q88H28 2.2 angstrom resolution crystal structure of p-hydroxybenzoate hydroxylase from pseudomonas putida in complex with fad. (see paper)
    60% identity, 100% coverage of query (480 bits)

pobA / F2JUE7 4-hydroxybenzoate 3-monooxygenase (EC 1.14.13.2) from Marinomonas mediterranea (strain ATCC 700492 / JCM 21426 / NBRC 103028 / MMB-1) (see paper)
    57% identity, 100% coverage of query (463 bits)

7on9A / C4TP09 Crystal structure of para-hydroxybenzoate-3-hydroxylase prai (see paper)
    54% identity, 100% coverage of query (414 bits)

PRAI_PAESP / C4TP09 4-hydroxybenzoate 3-monooxygenase (NAD(P)H); 4-hydroxybenzoate 3-hydroxylase; 4HB 3-hydroxylase; EC 1.14.13.33 from Paenibacillus sp. (see paper)
praI / BAH79107.1 4-hydroxybenzoate 3-hydroxylase from Paenibacillus sp. JJ-1b (see paper)
    54% identity, 100% coverage of query (414 bits)

8jqoA Protocatecuate hydroxylase from xylophilus ampelinus complexed with imidazole (see paper)
    46% identity, 100% coverage of query (367 bits)

8jqoD Protocatecuate hydroxylase from xylophilus ampelinus complexed with imidazole (see paper)
    38% identity, 99% coverage of query (266 bits)

Build an alignment

Build an alignment for RR42_RS21940 and 20 homologs with ≥ 30% identity

Select sequences

Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

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Change minimum %identity:

Additional hits (identity < 30%)

6fhoA / Q9HWJ1 Crystal structure of pqsl, a probable fad-dependent monooxygenase from pseudomonas aeruginosa - new refinement (see paper)
    29% identity, 76% coverage of query (64.7 bits)

pqsL / Q9HWJ1 2-aminobenzoylacetate N-monooxygenase from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) (see 3 papers)
    29% identity, 76% coverage of query (64.3 bits)

6sw2A Crystal structure of p. Aeruginosa pqsl in complex with 2- aminobenzoylacetate
    29% identity, 76% coverage of query (64.3 bits)

Q8ISJ5 kynurenine 3-monooxygenase (EC 1.14.13.9) from Anopheles stephensi (see paper)
    24% identity, 84% coverage of query (61.2 bits)

hspB / F8G0M4 6-hydroxy-3-succinoyl-pyridine hydroxylase monomer (EC 1.14.13.163) from Pseudomonas putida (strain DSM 28022 / S16) (see paper)
HSPB_PSEP6 / F8G0M4 6-hydroxy-3-succinoylpyridine 3-monooxygenase HspB; 6-hydroxy-3-succinoylpyridine hydroxylase; HSP hydroxylase; EC 1.14.13.163 from Pseudomonas putida (strain DSM 28022 / S16) (see 2 papers)
F8G0M4 6-hydroxy-3-succinoylpyridine 3-monooxygenase (EC 1.14.13.163) from Pseudomonas putida (see paper)
    27% identity, 91% coverage of query (56.6 bits)

ROX_STRVP / F2R776 Rifampicin monooxygenase; RIFMO; EC 1.14.13.211 from Streptomyces venezuelae (strain ATCC 10712 / CBS 650.69 / DSM 40230 / JCM 4526 / NBRC 13096 / PD 04745) (see paper)
    25% identity, 86% coverage of query (55.1 bits)

Cgl1158 / Q8NR94 resorcinol 4-hydroxylase (NADPH) (EC 1.14.13.219) from Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / BCRC 11384 / JCM 1318 / LMG 3730 / NCIMB 10025) (see 2 papers)
RES4H_CORGL / Q8NR94 NADPH-dependent resorcinol 4-hydroxylase; Resorcinol hydroxylase; EC 1.14.13.219 from Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / BCRC 11384 / JCM 1318 / LMG 3730 / NCIMB 10025) (see paper)
    23% identity, 84% coverage of query (55.1 bits)

6brdA / F2R776 Crystal structure of rifampin monooxygenase from streptomyces venezuelae, complexed with rifampin and fad (see paper)
    25% identity, 86% coverage of query (54.7 bits)

8fhjC Crystal structure of a fad monooxygenease from methylocystis sp. Strain sb2 (see paper)
    25% identity, 93% coverage of query (53.5 bits)

rif19 / Q9AE02 rifamycin ring hydroxylase from Amycolatopsis mediterranei (see 4 papers)
    23% identity, 79% coverage of query (52.8 bits)

THAL_CHOCO / Q0VZ69 Tryptophan 2-halogenase; EC 1.14.14.- from Chondromyces crocatus (see paper)
    23% identity, 85% coverage of query (52.4 bits)

5kowA / Q5YTV5 Structure of rifampicin monooxygenase (see paper)
    25% identity, 78% coverage of query (47.8 bits)

6c7sA Structure of rifampicin monooxygenase with product bound
    25% identity, 78% coverage of query (47.4 bits)

5koxA Structure of rifampicin monooxygenase complexed with rifampicin
    25% identity, 78% coverage of query (47.4 bits)

ROX_NOCFA / Q5YTV5 Rifampicin monooxygenase; RIFMO; EC 1.14.13.211 from Nocardia farcinica (strain IFM 10152) (see 3 papers)
Q5YTV5 rifampicin monooxygenase (EC 1.14.13.211) from Nocardia farcinica (see paper)
    25% identity, 78% coverage of query (47.4 bits)

7vwpB / A0A136PK59 Structure of the flavin-dependent monooxygenase flso1 from the biosynthesis of fluostatinsin
    22% identity, 87% coverage of query (47.4 bits)

6u0sA Crystal structure of the flavin-dependent monooxygenase piee in complex with fad and substrate
    23% identity, 79% coverage of query (45.1 bits)

6u0pC / W0C4C9 Crystal structure of piee, the flavin-dependent monooxygenase involved in the biosynthesis of piericidin a1 (see paper)
    23% identity, 79% coverage of query (45.1 bits)

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by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory