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Searching for up to 100 curated homologs for RR42_RS24545 FitnessBrowser__Cup4G11:RR42_RS24545 (546 a.a.)

Found high-coverage hits (≥70%) to 3 curated proteins.

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

TC 2.A.1.6.11 / F8SVK1 Acetate/haloacid transporter, Dehp2, with a possible atypical topology from Burkholderia sp. MBA4
    47% identity, 100% coverage of query (483 bits)

TC 2.A.1.6.8 / Q7X4L6 The acetate/monochloroacetate (haloacid) permease, Deh4p (Km = 5.5 mμM for acetate; 9 mμM for monochloroacetate) from Burkholderia cepacia (see 2 papers)
    46% identity, 97% coverage of query (481 bits)

Build an alignment

Build an alignment for RR42_RS24545 and 2 homologs with ≥ 30% identity

Select sequences

Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

Or download the sequences

Change minimum %identity:

Additional hits (identity < 30%)

HSERO_RS16820 2-oxoglutarate:H+ symporter from Herbaspirillum seropedicae SmR1
    29% identity, 78% coverage of query (159 bits)

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by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory