Sites on a Tree

 

Searching for up to 100 curated homologs for RR42_RS28180 FitnessBrowser__Cup4G11:RR42_RS28180 (298 a.a.)

Found high-coverage hits (≥70%) to 2 curated proteins.

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

TC 2.A.7.3.58 / Q31PG5 Possible transporter of polar amino acids including glutamate, glutamine and aspartate, DmeA. It complements a sepJ mutation in Anabaena (TC# 2.A.7.23.2), and SepJ complements a dmeA mutation. Alternatively, and less likely, it could be an activator of an ABC transporter catalyzing uptake of these amino acids from Synechococcus elongatus (strain PCC 7942)
    30% identity, 87% coverage of query (58.9 bits)

TC 2.A.7.3.67 / Q6SJ76 PecM (YedA) of 294 aas and 10 TMSs from Escherichia coli
    31% identity, 86% coverage of query (57.4 bits)

Build an alignment

Build an alignment for RR42_RS28180 and 2 homologs with ≥ 30% identity

Select sequences

Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

Or download the sequences

Change minimum %identity:

No additional hits (below 30% identity) were found

Or start over

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory