Searching for up to 100 curated homologs for RR42_RS31315 FitnessBrowser__Cup4G11:RR42_RS31315 (569 a.a.)
Found high-coverage hits (≥70%) to 16 curated proteins.
You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.
fdh1B / Q8KTI8 NAD-dependent formate dehydrogenase β subunit (EC 1.17.1.9) from Methylorubrum extorquens (see 2 papers)
Q8KTI8 formate dehydrogenase (EC 1.17.1.9) from Methylorubrum extorquens (see paper)
58% identity, 97% coverage of query (614 bits)
7vw6B / C5ATT6 Cryo-em structure of formate dehydrogenase 1 from methylorubrum extorquens am1 (see paper)
58% identity, 97% coverage of query (614 bits)
TC 3.D.1.5.1 / Q74GA3 NuoF aka GSU0343, component of Proton-translocating NADH dehydrogenase I from Geobacter sulfurreducens (see paper)
35% identity, 81% coverage of query (282 bits)
7q5yC / O66841 Structure of nadh:ubichinon oxidoreductase (complex i) of the hyperthermophilic eubacterium aquifex aeolicus
37% identity, 70% coverage of query (265 bits)
6saqB Wild-type nuoef from aquifex aeolicus bound to nadh-oh
37% identity, 70% coverage of query (265 bits)
6q9cB Crystal structure of aquifex aeolicus nadh-quinone oxidoreductase subunits nuoe and nuof bound to nadh under anaerobic conditions
37% identity, 70% coverage of query (265 bits)
6hl3B Wild-type nuoef from aquifex aeolicus - oxidized form bound to NAD+
37% identity, 70% coverage of query (265 bits)
hytB / S5YUD3 hydrogenase (NADP+,ferredoxin) β subunit from Clostridium autoethanogenum DSM 10061 (see paper)
32% identity, 81% coverage of query (263 bits)
7q4vB / H6LFG4 Electron bifurcating hydrogenase - hydabc from a. Woodii (see paper)
34% identity, 80% coverage of query (261 bits)
hymB / GI|14250934 protein HymB from Eubacterium acidaminophilum (see paper)
33% identity, 80% coverage of query (256 bits)
K0B622 formate dehydrogenase (NAD+, ferredoxin) (subunit 2/4) (EC 1.17.1.11) from Gottschalkia acidurici (see paper)
34% identity, 80% coverage of query (256 bits)
8oh5B / A0A0U1KYM9 Cryo-em structure of the electron bifurcating transhydrogenase stnabc complex from sporomusa ovata (state 2) (see paper)
34% identity, 81% coverage of query (255 bits)
hoxF / P22317 α subunit from Cupriavidus necator (strain ATCC 17699 / DSM 428 / KCTC 22496 / NCIMB 10442 / H16 / Stanier 337) (see paper)
P22317 hydrogen dehydrogenase (EC 1.12.1.2) from Cupriavidus necator (see paper)
31% identity, 92% coverage of query (244 bits)
hydB / Q8RBC9 NADH-dependent hydrogenase β subunit (EC 1.12.1.2) from Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) (see 2 papers)
34% identity, 80% coverage of query (243 bits)
5xfaA / A0A077L6X8 Crystal structure of NAD+-reducing [nife]-hydrogenase in the h2- reduced state (see paper)
36% identity, 88% coverage of query (237 bits)
5xf9A Crystal structure of NAD+-reducing [nife]-hydrogenase in the air- oxidized state
36% identity, 88% coverage of query (237 bits)
Build an alignment for RR42_RS31315 and 16 homologs with ≥ 30% identity
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Lawrence Berkeley National Laboratory