Searching for up to 100 curated homologs for RR42_RS33940 FitnessBrowser__Cup4G11:RR42_RS33940 (103 a.a.)
Found high-coverage hits (≥70%) to 39 curated proteins.
You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.
dntAb / Q6QUY4 2,4-dinitrotoluene dioxygenase complex ferredoxin component (EC 1.14.12.24) from Burkholderia sp. DNT (see 3 papers)
M9PSS0 nitroarene dioxygenase (subunit 2/4) (EC 1.14.12.23) from Diaphorobacter sp. DS2 (see paper)
57% identity, 100% coverage of query (133 bits)
nahAb / BAE92155.1 ferredoxin component NahAb of naphthalene dioxygenase from Pseudomonas putida (see 2 papers)
nahAb / AAA25901.1 ferredoxin from Pseudomonas putida (see paper)
55% identity, 100% coverage of query (131 bits)
NAGAB_RALSP / O52381 Naphthalene 1,2-dioxygenase/salicylate 5-hydroxylase systems, ferredoxin component; NDO/S5H systems ferredoxin component; Ferredoxin NagAb from Ralstonia sp. (see 2 papers)
58% identity, 100% coverage of query (129 bits)
5bokA / M9PSS0 Ferredoxin component of 3-nitrotoluene dioxygenase from diaphorobacter sp. Strain ds2
56% identity, 98% coverage of query (129 bits)
nbzAb / Q8RTL5 nitroarene dioxygenase complex ferredoxin component (EC 1.14.12.23; EC 1.14.12.24; EC 1.14.12.12) from Comamonas sp. JS765 (see 2 papers)
Q8RTL5 nitroarene dioxygenase (subunit 3/4) (EC 1.14.12.23) from Comamonas sp. (see paper)
57% identity, 100% coverage of query (129 bits)
ntdAb / P95563 2-nitrotoluene dioxygenase complex ferredoxin component (EC 1.14.12.23) from Pseudomonas sp. (see 3 papers)
57% identity, 100% coverage of query (128 bits)
ndoA / P0A185 naphthalene 1,2-dioxygenase complex ferredoxin component (EC 1.14.12.12) from Pseudomonas putida (see paper)
NDOA_PSEPU / P0A185 Naphthalene 1,2-dioxygenase system, ferredoxin component from Pseudomonas putida (Arthrobacter siderocapsulatus) (see 4 papers)
nahAb / AAA25905.1 naphthalene 1,2-dioxygenase ferredoxin component from Pseudomonas putida (see 3 papers)
53% identity, 100% coverage of query (125 bits)
2qpzA / P0A185 Naphthalene 1,2-dioxygenase rieske ferredoxin (see paper)
54% identity, 97% coverage of query (123 bits)
DNTAB_BURSR / Q45694 2,4-dinitrotoluene dioxygenase system, ferredoxin component from Burkholderia sp. (strain RASC) (see paper)
50% identity, 100% coverage of query (109 bits)
picB1 / A0A1X9WE61 6-hydroxypicolinate 3-monooxygenase subunit 1 from Alcaligenes faecalis (see paper)
39% identity, 97% coverage of query (88.2 bits)
andAb / Q84BZ1 anthranilate dioxygenase ferredoxin component (EC 1.14.12.1) from Burkholderia cepacia (see paper)
ANDAB_BURCE / Q84BZ1 Anthranilate 1,2-dioxygenase ferredoxin subunit from Burkholderia cepacia (Pseudomonas cepacia) (see paper)
36% identity, 97% coverage of query (82.0 bits)
cnbAb / F4Y9I4 nitroarene dioxygenase ferredoxin component (EC 1.14.12.23) from Stutzerimonas stutzeri (see 2 papers)
F4Y9I4 nitroarene dioxygenase (subunit 3/4) (EC 1.14.12.23) from Pseudomonas stutzeri ZWLR2-1 (see paper)
37% identity, 96% coverage of query (80.5 bits)
YfhW / b2540 putative 3-phenylpropionate/cinnamate dioxygenase ferredoxin subunit (EC 1.14.12.19) from Escherichia coli K-12 substr. MG1655 (see 3 papers)
hcaC / P0ABW0 putative 3-phenylpropionate/cinnamate dioxygenase ferredoxin subunit (EC 1.14.12.19) from Escherichia coli (strain K12) (see 3 papers)
P0ABW0 2-hydroxy-6-oxonona-2,4-dienedioate hydrolase (EC 3.7.1.14) from Escherichia coli (see paper)
hcaC / RF|NP_417035 3-phenylpropionate/cinnamic acid dioxygenase ferredoxin subunit from Escherichia coli K12 (see 5 papers)
39% identity, 91% coverage of query (80.1 bits)
CARAC_PSERE / Q8GI16 Ferredoxin CarAc; Carbazole 1,9a-dioxygenase, ferredoxin component; CARDO from Pseudomonas resinovorans (see 4 papers)
Q8GI16 carbazole 1,9a-dioxygenase (EC 1.14.12.22) from Pseudomonas resinovorans (see paper)
carAc / BAC41549.1 ferredoxin component of carbazole from Pseudomonas resinovorans (see 9 papers)
39% identity, 98% coverage of query (77.4 bits)
phnA3 / CAG17580.1 ferredoxin from Sphingomonas sp. CHY-1 (see paper)
48% identity, 71% coverage of query (77.0 bits)
cmtAd / Q51978 p-cumate 2,3-dioxygenase system, ferredoxin component (EC 1.14.12.25) from Pseudomonas putida (see paper)
CMTAD_PSEPU / Q51978 p-cumate 2,3-dioxygenase system, ferredoxin component from Pseudomonas putida (Arthrobacter siderocapsulatus) (see 3 papers)
Q51978 p-cumate 2,3-dioxygenase (subunit 1/4) (EC 1.14.12.25) from Pseudomonas putida (see paper)
cmtAd / AAB62289.1 p-cumate dioxygenase ferredoxin subunit from Pseudomonas putida (see 3 papers)
46% identity, 76% coverage of query (77.0 bits)
2i7fA / A2TC31 Sphingomonas yanoikuyae b1 ferredoxin (see paper)
46% identity, 72% coverage of query (75.9 bits)
4nbbE / Q8GI16 Carbazole- and oxygen-bound oxygenase with ile262 replaced by val and ferredoxin complex of carbazole 1,9a-dioxygenase (see paper)
40% identity, 94% coverage of query (75.5 bits)
bphA3 / A0A097SRF0 biphenyl 2,3-dioxygenase ferredoxin subunit (EC 1.14.12.18) from Cupriavidus sp. WS (see paper)
33% identity, 97% coverage of query (72.0 bits)
1fqtA / P37332 Crystal structure of the rieske-type ferredoxin associated with biphenyl dioxygenase (see paper)
bphF / GB|ABE37056.1 biphenyl dioxygenase system ferredoxin component from Burkholderia xenovorans LB400 (see 4 papers)
32% identity, 97% coverage of query (70.9 bits)
tecA3 / O24678 chlorobenzene dioxygenase terminal oxidase ferredoxin subunit (EC 1.14.12.26; EC 1.14.12.18; EC 1.14.12.12) from Cupriavidus sp. (strain PS12) (see 2 papers)
TECA3_CUPXP / O24678 Chlorobenzene dioxygenase, ferredoxin component from Cupriavidus sp. (strain PS12) (see 2 papers)
35% identity, 96% coverage of query (70.9 bits)
tcbAc / Q52385 chlorobenzene dioxygenase, ferredoxin component (EC 1.14.12.26) from Pseudomonas sp. (see 2 papers)
Q52385 chlorobenzene dioxygenase (subunit 2/4) (EC 1.14.12.26) from Pseudomonas sp. P51 (see 2 papers)
34% identity, 96% coverage of query (70.1 bits)
bphF / AAC44529.1 biphenyl dioxygenase ferredoxin from Pandoraea pnomenusa (see paper)
34% identity, 96% coverage of query (70.1 bits)
bedB / Q07947 benzene 1,2 dioxygenase ferredoxin subunit (EC 1.14.12.3) from Pseudomonas putida (see 3 papers)
bedB / AAA17760.1 BedB from Pseudomonas putida (see 3 papers)
32% identity, 96% coverage of query (67.8 bits)
todB / A5W4F0 toluene dioxygenase ferredoxin subunit (EC 1.14.12.11) from Pseudomonas putida (strain ATCC 700007 / DSM 6899 / BCRC 17059 / F1) (see paper)
33% identity, 96% coverage of query (67.0 bits)
2e4pA / Q52440 Crystal structure of bpha3 (oxidized form) (see paper)
31% identity, 96% coverage of query (67.0 bits)
3dqyA / A5W4F0 Crystal structure of toluene 2,3-dioxygenase ferredoxin (see paper)
33% identity, 96% coverage of query (67.0 bits)
3gceA / Q2HWH6 Ferredoxin of carbazole 1,9a-dioxygenase from nocardioides aromaticivorans ic177 (see paper)
41% identity, 79% coverage of query (64.3 bits)
bpdB / AAB07752.1 ferredoxin from Rhodococcus sp. M5 (see paper)
33% identity, 95% coverage of query (63.9 bits)
Q2HWH6 carbazole 1,9a-dioxygenase (EC 1.14.12.22) from Nocardioides aromaticivorans (see paper)
41% identity, 79% coverage of query (63.5 bits)
BPHA3_RHOJR / Q53124 Biphenyl 2,3-dioxygenase, ferredoxin component; Biphenyl 2,3-dioxygenase, electron transfer component BphA3; Biphenyl dioxygenase system, ferredoxin component; BDO, ferredoxin component from Rhodococcus jostii (strain RHA1) (see paper)
bphA3 / BAA06870.1 biphenyl dioxygenase from Rhodococcus jostii RHA1 (see paper)
39% identity, 73% coverage of query (59.3 bits)
bphAc / BAM76238.1 biphenyl 2,3-dioxygenase, ferredoxin component from Janibacter sp. TYM3221 (see paper)
35% identity, 83% coverage of query (58.5 bits)
auaF / F3Y662 aurachin D N-monooxygenase from Stigmatella aurantiaca (see paper)
33% identity, 95% coverage of query (53.5 bits)
BWI76_RS17365 Nitrite reductase (NAD(P)H) (EC 1.7.1.4) from Klebsiella michiganensis M5al
34% identity, 97% coverage of query (52.8 bits)
nasB / GB|AAA25099.1 nitrite reductase [NAD(P)H], large subunit from Klebsiella oxytoca (see 2 papers)
34% identity, 97% coverage of query (52.4 bits)
hyd1 / CAC86888.1 membrane-bound NiFe hydrogenase from Acidianus ambivalens (see paper)
32% identity, 73% coverage of query (50.4 bits)
AO353_00810 Nitrite reductase (NAD(P)H) (EC 1.7.1.4) from Pseudomonas fluorescens FW300-N2E3
31% identity, 80% coverage of query (49.3 bits)
NVD_HEMPU / F7J188 Cholesterol 7-desaturase nvd; Neverland; Nvd_Hp; EC 1.14.19.21 from Hemicentrotus pulcherrimus (Sea urchin) (Strongylocentrotus pulcherrimus) (see paper)
F7J188 cholesterol 7-desaturase (EC 1.14.19.21) from Hemicentrotus pulcherrimus (see paper)
32% identity, 90% coverage of query (47.4 bits)
Build an alignment for RR42_RS33940 and 38 homologs with ≥ 30% identity
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SDX_SULTO / Q9HH83 Sulredoxin; Pink FeS protein from Sulfurisphaera tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7) (Sulfolobus tokodaii) (see paper)
29% identity, 96% coverage of query (44.3 bits)
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