Searching for up to 100 curated homologs for SM_b20126 FitnessBrowser__Smeli:SM_b20126 (365 a.a.)

Found high-coverage hits (≥70%) to 10 curated proteins.

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

NUPP_BACSU / O05254 Guanosine ABC transporter permease protein NupP from Bacillus subtilis (strain 168) (see paper)
    39% identity, 85% coverage of query (206 bits)

TC 3.A.1.2.10 / O83342 Ribose/galactose ABC transporter, permease protein aka RbsC-1, component of The purine nucleoside permease (probably transports guanosine, adenosine, 2'-deoxyguanosine, inosine and xanthosine with decreasing affinity in this order) from Treponema pallidum (see paper)
    33% identity, 88% coverage of query (167 bits)

TSGBD_HALVD / D4GPW2 Glucose ABC transporter permease protein TsgB13 from Haloferax volcanii (strain ATCC 29605 / DSM 3757 / JCM 8879 / NBRC 14742 / NCIMB 2012 / VKM B-1768 / DS2) (Halobacterium volcanii) (see paper)
    35% identity, 90% coverage of query (160 bits)

NUPB_LACLM / A2RKA6 Nucleoside ABC transporter permease protein NupB from Lactococcus lactis subsp. cremoris (strain MG1363) (see paper)
TC 3.A.1.2.17 / A2RKA6 Purine/cytidine ABC transporter permease protein, component of General nucleoside uptake porter, NupABC/BmpA (transports all common nucleosides as well as 5-fluorocytidine, inosine, deoxyuridine and xanthosine) (Martinussen et al., 2010) (Most similar to 3.A.1.2.12). NupA is 506aas with two ABC (C) domains. NupB has 8 predicted TMSs, NupC has 9 or 10 predicted TMSs in a 4 + 1 (or 2) + 4 arrangement from Lactococcus lactis subsp. cremoris (strain MG1363) (see paper)
    32% identity, 90% coverage of query (154 bits)

TC 3.A.1.2.12 / Q8DU38 RnsC, component of The (deoxy)ribonucleoside permease; probably takes up all deoxy- and ribonucleosides (cytidine, uridine, adenosine and toxic analogues, fluorocytidine and fluorouridine tested), but not ribose or nucleobases from Streptococcus mutans (see paper)
    34% identity, 82% coverage of query (143 bits)

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Build an alignment for SM_b20126 and 5 homologs with ≥ 30% identity

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Additional hits (identity < 30%)

TC 3.A.1.2.28 / O83323 Conserved hypothetical integral membrane protein, component of Riboflavin uptake ABC transporter, RfuABCD from Treponema pallidum (strain Nichols)
    24% identity, 88% coverage of query (72.8 bits)

NUPC_LACLM / A2RKA5 Nucleoside ABC transporter permease protein NupC from Lactococcus lactis subsp. cremoris (strain MG1363) (see paper)
TC 3.A.1.2.17 / A2RKA5 Purine/cytidine ABC transporter permease protein, component of General nucleoside uptake porter, NupABC/BmpA (transports all common nucleosides as well as 5-fluorocytidine, inosine, deoxyuridine and xanthosine) (Martinussen et al., 2010) (Most similar to 3.A.1.2.12). NupA is 506aas with two ABC (C) domains. NupB has 8 predicted TMSs, NupC has 9 or 10 predicted TMSs in a 4 + 1 (or 2) + 4 arrangement from Lactococcus lactis subsp. cremoris (strain MG1363) (see paper)
    29% identity, 72% coverage of query (68.2 bits)

TC 3.A.1.2.18 / Q9WXW0 ABC-type transporter, integral membrane subunit, component of Xylose porter (Nanavati et al. 2006). Regulated by xylose-responsive regulator XylR from Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099)
    25% identity, 72% coverage of query (67.0 bits)

TC 3.A.1.2.12 / Q8DU39 RnsD, component of The (deoxy)ribonucleoside permease; probably takes up all deoxy- and ribonucleosides (cytidine, uridine, adenosine and toxic analogues, fluorocytidine and fluorouridine tested), but not ribose or nucleobases from Streptococcus mutans (see paper)
    28% identity, 72% coverage of query (63.2 bits)

NUPQ_BACSU / O05255 Guanosine ABC transporter permease protein NupQ from Bacillus subtilis (strain 168) (see paper)
    28% identity, 76% coverage of query (52.4 bits)

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