Sites on a Tree

 

Searching for up to 100 curated homologs for SM_b20292 FitnessBrowser__Smeli:SM_b20292 (327 a.a.)

Found high-coverage hits (≥70%) to 4 curated proteins.

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

1us4A / P83817 Putative glur0 ligand binding core with l-glutamate (see paper)
    37% identity, 91% coverage of query (194 bits)

Psest_0085 alpha-ketoglutarate TRAP transporter, solute receptor component from Pseudomonas stutzeri RCH2
    31% identity, 91% coverage of query (140 bits)

Build an alignment

Build an alignment for SM_b20292 and 2 homologs with ≥ 30% identity

Select sequences

Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

Or download the sequences

Change minimum %identity:

Additional hits (identity < 30%)

HP15_722 TRAP transporter for fumarate, succinate, L-malate, and 2-oxoglutarate, solute receptor component from Marinobacter adhaerens HP15
    24% identity, 89% coverage of query (91.7 bits)

Dshi_1195 TRAP transporter for fumarate, succinate, L-malate, and 2-oxoglutarate, solute receptor component from Dinoroseobacter shibae DFL-12
    24% identity, 96% coverage of query (75.1 bits)

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by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory