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Searching for up to 100 curated homologs for SM_b20893 SM_b20893 sugar uptake ABC transporter permease (404 a.a.)

Found high-coverage hits (≥70%) to 10 curated proteins.

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

TC 3.A.1.2.5 / O05177 GguB aka ATU2346 aka AGR_C_4262, component of Multiple sugar (arabinose, xylose, galactose, glucose, fucose) putative porter from Agrobacterium radiobacter (see paper)
    72% identity, 99% coverage of query (541 bits)

TC 3.A.1.2.22 / Q8G3Q9 Probable ABC transport system permease protein for sugars, component of ABC sugar transporter that plays a role in the probiotic benefits through acetate production from Bifidobacterium longum (strain NCC 2705)
    42% identity, 99% coverage of query (305 bits)

XylH / b3568 xylose ABC transporter membrane subunit (EC; EC from Escherichia coli K-12 substr. MG1655 (see 3 papers)
TC 3.A.1.2.4 / P0AGI4 Xylose transport system permease protein XylH aka B3568, component of Xylose porter from Escherichia coli (see 4 papers)
XylH / P0AGI4 xylose ABC transporter membrane subunit (EC from Escherichia coli (strain K12) (see paper)
xylH / RF|NP_418025 D-xylose ABC transporter, permease protein from Escherichia coli K12 (see 7 papers)
    37% identity, 94% coverage of query (233 bits)

TC 3.A.1.2.26 / A6LW12 Monosaccharide-transporting ATPase, component of Xylose transporter, XylFGH (XylF (R), 359 aas; XylG (C), 525 aas; XylH (M), 389 aas from Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052)
    38% identity, 91% coverage of query (224 bits)

PGA1_262p00440 glucose transporter, permease component from Phaeobacter inhibens BS107
    33% identity, 98% coverage of query (191 bits)

TC 3.A.1.2.20 / G4FGN4 Putative beta-xyloside ABC transporter, permease component, component of Glucose porter. Also bind xylose (Boucher and Noll 2011). Induced by glucose (Frock et al. 2012). Directly regulated by glucose-responsive regulator GluR from Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099)
    34% identity, 87% coverage of query (146 bits)

TC 3.A.1.2.24 / O50505 Probable ABC-type transmembrane transport protein, component of XylFGH downstream of characterized transcriptional regulator, ROK7B7 (Sco6008); XylF (Sco6009); XylG (Sco6010); XylH (Sco6011)) from Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)
    30% identity, 84% coverage of query (142 bits)

Build an alignment

Build an alignment for SM_b20893 and 7 homologs with ≥ 30% identity

Select sequences

Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

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Change minimum %identity:

Additional hits (identity < 30%)

PGA1_c07310 Inositol transport system permease protein from Phaeobacter inhibens BS107
    26% identity, 95% coverage of query (92.8 bits)

TC 3.A.1.2.11 / Q92WK1 EryF aka RB0338, component of The erythritol permease, EryEFG (Geddes et al., 2010) (probably orthologous to 3.A.1.2.16) from Rhizobium meliloti (Sinorhizobium meliloti) (see paper)
    29% identity, 87% coverage of query (92.0 bits)

FRUF_BIFLO / Q8G846 Fructose import permease protein FruF from Bifidobacterium longum (strain NCC 2705) (see paper)
    26% identity, 80% coverage of query (51.6 bits)

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by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory