Searching for up to 100 curated homologs for SM_b21587 FitnessBrowser__Smeli:SM_b21587 (320 a.a.)
Found high-coverage hits (≥70%) to 66 curated proteins.
You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.
YtfQ / b4227 galactofuranose ABC transporter periplasmic binding protein (EC 7.5.2.9) from Escherichia coli K-12 substr. MG1655 (see 3 papers)
YtfQ / P39325 galactofuranose ABC transporter periplasmic binding protein (EC 7.5.2.9) from Escherichia coli (strain K12) (see 3 papers)
YTFQ_ECOLI / P39325 Galactofuranose-binding protein YtfQ from Escherichia coli (strain K12) (see paper)
P39325 ABC-type D-galactofuranose transporter (EC 7.5.2.9) from Escherichia coli (see paper)
69% identity, 92% coverage of query (417 bits)
2vk2A / P39325 Crystal structure of a galactofuranose binding protein (see paper)
69% identity, 92% coverage of query (417 bits)
Shewana3_2073 L-arabinose ABC transporter, substrate-binding component AraU from Shewanella sp. ANA-3
58% identity, 95% coverage of query (360 bits)
5ocpA / A0KWY4 The periplasmic binding protein component of the arabinose abc transporter from shewanella sp. Ana-3 bound to alpha and beta-l- arabinofuranose
62% identity, 87% coverage of query (354 bits)
6hbdA / A0QT50 Crystal structure of msmeg_1712 from mycobacterium smegmatis in complex with beta-d-galactofuranose (see paper)
52% identity, 88% coverage of query (278 bits)
6hyhA Crystal structure of msmeg_1712 from mycobacterium smegmatis in complex with beta-d-fucofuranose
52% identity, 88% coverage of query (278 bits)
6hbmA Crystal structure of msmeg_1712 from mycobacterium smegmatis in complex with alpha-l-arabinofuranose
52% identity, 88% coverage of query (278 bits)
2ioyA / Q8RD41 Crystal structure of thermoanaerobacter tengcongensis ribose binding protein (see paper)
35% identity, 80% coverage of query (136 bits)
7e7mC / Q8E283 Crystal structure analysis of the streptococcus agalactiae ribose binding protein rbsb
33% identity, 91% coverage of query (131 bits)
RBSB_BACSU / P36949 Ribose import binding protein RbsB from Bacillus subtilis (strain 168) (see 2 papers)
31% identity, 92% coverage of query (130 bits)
FRUE_BIFLO / Q8G848 Fructose import binding protein FruE from Bifidobacterium longum (strain NCC 2705) (see paper)
31% identity, 90% coverage of query (122 bits)
1dbpA / P02925 Identical mutations at corresponding positions in two homologous proteins with non-identical effects (see paper)
32% identity, 71% coverage of query (118 bits)
RbsB / b3751 ribose ABC transporter periplasmic binding protein from Escherichia coli K-12 substr. MG1655 (see 25 papers)
RbsB / P02925 ribose ABC transporter periplasmic binding protein from Escherichia coli (strain K12) (see 25 papers)
RBSB_ECOLI / P02925 Ribose import binding protein RbsB from Escherichia coli (strain K12) (see 5 papers)
TC 3.A.1.2.1 / P02925 RbsB aka RBSP aka PRLB aka B3751, component of Ribose porter from Escherichia coli (see 11 papers)
rbsB / GB|AAC76774.1 D-ribose-binding periplasmic protein; EC 3.6.3.17 from Escherichia coli K12 (see 11 papers)
32% identity, 71% coverage of query (115 bits)
TC 3.A.1.2.13 / A6VKT0 RbsB, component of The probable autoinducer-2 (AI-2;, a furanosyl borate diester: 3aS,6S,6aR)-2,2,6,6a-tetrahydroxy-3a-methyltetrahydrofuro[3,2-d][1,3,2]dioxaborolan-2-uide) uptake porter (Shao et al., 2007) (50-70% identical to RbsABC of E. coli; TC# 3.A.1.2.1) from Actinobacillus succinogenes (strain ATCC 55618 / 130Z)
30% identity, 86% coverage of query (108 bits)
PS417_11885 Inositol transport system sugar-binding protein from Pseudomonas simiae WCS417
30% identity, 84% coverage of query (108 bits)
4zjpA / A6VKT0 Structure of an abc-transporter solute binding protein (sbp_ipr025997) from actinobacillus succinogenes (asuc_0197, target efi-511067) with bound beta-d-ribopyranose
32% identity, 71% coverage of query (106 bits)
2x7xA / Q8A6X1 Fructose binding periplasmic domain of hybrid two component system bt1754 (see paper)
30% identity, 70% coverage of query (101 bits)
THPA_MYCS2 / A0QYB5 D-threitol-binding protein from Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155) (Mycobacterium smegmatis) (see paper)
32% identity, 70% coverage of query (95.5 bits)
4rsmA / A0QYB5 Crystal structure of carbohydrate transporter msmeg_3599 from mycobacterium smegmatis str. Mc2 155, target efi-510970, in complex with d-threitol (see paper)
32% identity, 70% coverage of query (95.1 bits)
XYPA_MYCS2 / A0QYB3 Xylitol-binding protein from Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155) (Mycobacterium smegmatis) (see paper)
31% identity, 70% coverage of query (94.0 bits)
4rs3A / A0QYB3 Crystal structure of carbohydrate transporter a0qyb3 from mycobacterium smegmatis str. Mc2 155, target efi-510969, in complex with xylitol (see paper)
31% identity, 70% coverage of query (93.6 bits)
TC 3.A.1.2.21 / B8H228 Inositol ABC transporter, periplasmic inositol-binding protein IbpA, component of The myoinositol (high affinity)/ D-ribose (low affinity) transporter IatP/IatA/IbpA. The structure of IbpA with myoinositol bound has been solved from Caulobacter crescentus (strain NA1000 / CB15N)
31% identity, 82% coverage of query (93.6 bits)
Build an alignment for SM_b21587 and 22 homologs with ≥ 30% identity
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2fn8A / Q9X053 Thermotoga maritima ribose binding protein ribose bound form (see paper)
28% identity, 83% coverage of query (93.6 bits)
5hkoA Crystal structure of abc transporter solute binding protein msmeg_3598 from mycobacterium smegmatis str. Mc2 155, target efi-510969, in complex with l-sorbitol
31% identity, 70% coverage of query (93.6 bits)
TC 3.A.1.2.19 / Q9X053 Periplasmic binding protein/LacI transcriptional regulator, component of D-ribose porter (Nanavati et al., 2006). Induced by ribose from Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099)
28% identity, 87% coverage of query (93.2 bits)
4rxmA Crystal structure of periplasmic abc transporter solute binding protein a7jw62 from mannheimia haemolytica phl213, target efi-511105, in complex with myo-inositol
29% identity, 85% coverage of query (91.3 bits)
4rxmB Crystal structure of periplasmic abc transporter solute binding protein a7jw62 from mannheimia haemolytica phl213, target efi-511105, in complex with myo-inositol
29% identity, 85% coverage of query (91.3 bits)
4irxA / A0A0H3C834 Crystal structure of caulobacter myo-inositol binding protein bound to myo-inositol (see paper)
31% identity, 79% coverage of query (90.1 bits)
APIBP_RHIR8 / B9JK76 D-apiose import binding protein; D-apiose binding SBP from Rhizobium rhizogenes (strain K84 / ATCC BAA-868) (Agrobacterium radiobacter) (see paper)
28% identity, 83% coverage of query (85.1 bits)
5dteB / A6VKG5 Crystal structure of an abc transporter periplasmic solute binding protein (ipr025997) from actinobacillus succinogenes 130z(asuc_0081, target efi-511065) with bound d-allose
30% identity, 70% coverage of query (83.2 bits)
APIBP_PARG4 / B1G898 D-apiose import binding protein; D-apiose binding SBP from Paraburkholderia graminis (strain ATCC 700544 / DSM 17151 / LMG 18924 / NCIMB 13744 / C4D1M) (see paper)
29% identity, 83% coverage of query (82.8 bits)
5ibqA / Q2JZQ5 Crystal structure of an abc solute binding protein from rhizobium etli cfn 42 (rhe_pf00037,target efi-511357) in complex with alpha-d-apiose
28% identity, 84% coverage of query (79.7 bits)
4ry0A Crystal structure of ribose transporter solute binding protein rhe_pf00037 from rhizobium etli cfn 42, target efi-511357, in complex with d-ribose
28% identity, 84% coverage of query (79.7 bits)
APIBP_RHIEC / Q2JZQ5 D-apiose import binding protein; D-apiose binding SBP from Rhizobium etli (strain CFN 42 / ATCC 51251) (see paper)
28% identity, 84% coverage of query (79.3 bits)
APIBP_ACTSZ / A6VKQ8 D-apiose import binding protein; D-apiose binding SBP from Actinobacillus succinogenes (strain ATCC 55618 / DSM 22257 / CCUG 43843 / 130Z) (see paper)
28% identity, 85% coverage of query (79.0 bits)
GalR / VIMSS5694380 GalR regulator of Galactosides utilization, effector Galactose (repressor) from Thermosipho africanus TCF52B
26% identity, 78% coverage of query (77.0 bits)
TC 3.A.1.2.16 / Q1M4Q9 Periplasmic erythritol binding protein, component of The erythritol uptake permease, EryEFG (Yost et al., 2006) (probably orthologous to 3.A.1.2.11) from Rhizobium leguminosarum bv. viciae (strain 3841) (see paper)
30% identity, 70% coverage of query (75.5 bits)
8fxuA / D9TSJ1 Thermoanaerobacter thermosaccharolyticum periplasmic glucose-binding protein glucose complex: badan conjugate attached at f17c (see paper)
29% identity, 74% coverage of query (75.5 bits)
6guqA Crystal structure of ganp, a glucose-galactose binding protein from geobacillus stearothermophilus, in complex with glucose
24% identity, 85% coverage of query (72.4 bits)
6gt9A / W8QN64 Crystal structure of ganp, a glucose-galactose binding protein from geobacillus stearothermophilus, in complex with galactose
24% identity, 85% coverage of query (72.0 bits)
2h3hA / Q9WXW9 Crystal structure of the liganded form of thermotoga maritima glucose binding protein (see paper)
30% identity, 74% coverage of query (71.2 bits)
FRCB_RHIML / Q9F9B2 Fructose import binding protein FrcB from Rhizobium meliloti (Ensifer meliloti) (Sinorhizobium meliloti) (see paper)
TC 3.A.1.2.7 / Q9F9B2 FrcB, component of Fructose/mannose/ribose porter from Rhizobium meliloti (Sinorhizobium meliloti) (see paper)
29% identity, 76% coverage of query (68.6 bits)
3c6qC Apo and ligand-bound form of a thermophilic glucose/xylose binding protein
30% identity, 74% coverage of query (68.6 bits)
B9K0Q5 ABC-type D-galactose transporter (EC 7.5.2.11) from Agrobacterium vitis (see paper)
26% identity, 73% coverage of query (61.6 bits)
4y9tA / B9K0Q5 Crystal structure of an abc transporter solute binding protein (ipr025997) from agrobacterium vitis s4 (avi_5305, target efi-511224) with bound alpha-d-glucosamine (see paper)
26% identity, 73% coverage of query (61.6 bits)
5br1A Crystal structure of an abc transporter solute binding protein (ipr025997) from agrobacterium vitis s4 (avi_5305, target efi-511224) with bound alpha-d-galactosamine
26% identity, 73% coverage of query (61.6 bits)
PGA1_262p00430 glucose transporter, periplasmic substrate-binding component from Phaeobacter inhibens BS107
29% identity, 73% coverage of query (60.1 bits)
AscG / b2714 DNA-binding transcriptional repressor AscG from Escherichia coli K-12 substr. MG1655 (see 4 papers)
26% identity, 77% coverage of query (57.8 bits)
MglB / b2150 D-galactose/methyl-galactoside ABC transporter periplasmic binding protein from Escherichia coli K-12 substr. MG1655 (see 43 papers)
MglB / P0AEE5 D-galactose/methyl-galactoside ABC transporter periplasmic binding protein from Escherichia coli (strain K12) (see 42 papers)
MGLB_ECOLI / P0AEE5 D-galactose/methyl-galactoside binding periplasmic protein MglB; D-galactose-binding periplasmic protein; GBP; D-galactose/D-glucose-binding protein; GGBP from Escherichia coli (strain K12) (see 3 papers)
TC 3.A.1.2.3 / P0AEE5 D-galactose-binding periplasmic protein DGAL aka MglB aka B2150, component of Galactose/glucose (methyl galactoside) porter from Escherichia coli (see 10 papers)
25% identity, 89% coverage of query (57.4 bits)
SBPA_AZOBR / P54083 Multiple sugar-binding periplasmic protein SbpA; Sugar-binding protein A from Azospirillum brasilense (see paper)
26% identity, 73% coverage of query (57.4 bits)
4z0nA / D1AWX5 Crystal structure of a periplasmic solute binding protein (ipr025997) from streptobacillus moniliformis dsm-12112 (smon_0317, target efi- 511281) with bound d-galactose
28% identity, 80% coverage of query (56.2 bits)
AscG / VIMSS3405739 AscG regulator of Beta-glucosides utilization; Cellobiose utilization, effector Cellobiose-6-phosphate; Beta-glucoside-6-phosphate (repressor) from Citrobacter koseri ATCC BAA-895
24% identity, 77% coverage of query (55.5 bits)
BglR / VIMSS6937230 BglR regulator of Beta-glucosides utilization, effector Beta-glucoside (repressor) from Shewanella amazonensis SB2B
24% identity, 77% coverage of query (55.1 bits)
HSERO_RS05260 ABC transporter for L-fucose, substrate-binding component from Herbaspirillum seropedicae SmR1
26% identity, 75% coverage of query (54.7 bits)
4wutA / B9K0B2 Crystal structure of an abc transporter solute binding protein (ipr025997) from agrobacterium vitis (avi_5133, target efi-511220) with bound d-fucose
24% identity, 71% coverage of query (53.9 bits)
P23905 D-galactose/methyl-galactoside binding periplasmic protein MglB; D-galactose-binding periplasmic protein; GBP; D-galactose/D-glucose-binding protein; GGBP from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
24% identity, 89% coverage of query (53.9 bits)
GalR / VIMSS7272257 GalR regulator of Galactosides utilization, effector Galactose (repressor) from Thermotoga sp. RQ2
24% identity, 73% coverage of query (53.1 bits)
3ma0A / P37387 Closed liganded crystal structure of xylose binding protein from escherichia coli (see paper)
28% identity, 79% coverage of query (53.1 bits)
GalR / VIMSS3562401 GalR regulator of Galactosides utilization, effector Galactose (repressor) from Fervidobacterium nodosum Rt17-B1
25% identity, 78% coverage of query (52.8 bits)
XylT / b3566 xylose ABC transporter periplasmic binding protein (EC 7.5.2.13; EC 7.5.2.10) from Escherichia coli K-12 substr. MG1655 (see 8 papers)
xylF / P37387 xylose ABC transporter periplasmic binding protein (EC 7.5.2.13) from Escherichia coli (strain K12) (see 6 papers)
TC 3.A.1.2.4 / P37387 XylF aka XYLT aka B3566, component of Xylose porter from Escherichia coli (see 5 papers)
xylF / GB|AAC76590.1 D-xylose ABC transporter, periplasmic D-xylose-binding protein from Escherichia coli K12 (see 7 papers)
28% identity, 79% coverage of query (52.8 bits)
2qw1A Glucose/galactose binding protein bound to 3-o-methyl d-glucose
26% identity, 73% coverage of query (51.2 bits)
2gbpA / P0AEE5 Sugar and signal-transducer binding sites of the escherichia coli galactose chemoreceptor protein (see paper)
26% identity, 73% coverage of query (50.8 bits)
8fxtA Escherichia coli periplasmic glucose-binding protein glucose complex: acrylodan conjugate attached at w183c
26% identity, 73% coverage of query (49.7 bits)
5kwsA / Q8D072 Crystal structure of galactose binding protein from yersinia pestis in the complex with beta d glucose
26% identity, 73% coverage of query (49.3 bits)
1gcaA The 1.7 angstroms refined x-ray structure of the periplasmic glucose(slash)galactose receptor from salmonella typhimurium
25% identity, 73% coverage of query (48.9 bits)
3ga5A X-ray structure of glucose/galactose receptor from salmonella typhimurium in complex with (2r)-glyceryl-beta-d-galactopyranoside
25% identity, 73% coverage of query (48.9 bits)
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Lawrence Berkeley National Laboratory