Searching for up to 100 curated homologs for SM_b21652 FitnessBrowser__Smeli:SM_b21652 (424 a.a.)
Found high-coverage hits (≥70%) to 19 curated proteins.
Removed hits that are identical to the query, leaving 18
You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.
TC 3.A.1.1.4 / P29822 LacE, component of Lactose porter from Agrobacterium radiobacter (see 2 papers)
73% identity, 94% coverage of query (616 bits)
Build an alignment for SM_b21652 and 1 homologs with ≥ 30% identity
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TC 3.A.1.1.22 / Q9X0T1 MalE1; aka Maltose ABC transporter, periplasmic maltose-binding protein, component of The maltose, maltotriose, mannotetraose (MalE1)/maltose, maltotriose, trehalose (MalE2) porter (Nanavati et al., 2005). For MalG1 (823aas) and MalG2 (833aas), the C-terminal transmembrane domain with 6 putative TMSs is preceded by a single N-terminal TMS and a large (600 residue) hydrophilic region showing sequence similarity to MLP1 and 2 (9.A.14; e-12 & e-7) as well as other proteins from Thermotoga maritima (see paper)
27% identity, 74% coverage of query (79.7 bits)
6dtuA / Q9X0T1 Maltotetraose bound t. Maritima male1 (see paper)
26% identity, 73% coverage of query (79.3 bits)
TC 3.A.1.1.23 / Q9X9R7 CBP protein aka CebE, component of The cellobiose/cellotriose (and possibly higher cellooligosaccharides), CebEFGMsiK [MsiK functions to energize several ABC transporters including those for maltose/maltotriose and trehalose] from Streptomyces reticuli (see paper)
cebE / CAB46342.1 CBP protein from Streptomyces reticuli (see paper)
24% identity, 84% coverage of query (73.6 bits)
6dtsA / Q9S5Y1 Maltotetraose bound t. Maritima male2 (see paper)
24% identity, 73% coverage of query (72.8 bits)
Q92AS8 ABC-type beta-glucan transporter (EC 7.5.2.3) from Listeria innocua (see paper)
24% identity, 74% coverage of query (72.8 bits)
TC 3.A.1.1.22 / Q9S5Y1 MalE2; aka Maltose ABC transporter, periplasmic maltose-binding protein, component of The maltose, maltotriose, mannotetraose (MalE1)/maltose, maltotriose, trehalose (MalE2) porter (Nanavati et al., 2005). For MalG1 (823aas) and MalG2 (833aas), the C-terminal transmembrane domain with 6 putative TMSs is preceded by a single N-terminal TMS and a large (600 residue) hydrophilic region showing sequence similarity to MLP1 and 2 (9.A.14; e-12 & e-7) as well as other proteins from Thermotoga maritima (see paper)
24% identity, 73% coverage of query (72.4 bits)
7x0lA / A3DE73 Crystal structure of sugar binding protein cbpb complexed wtih cellotetraose from clostridium thermocellum (see paper)
27% identity, 73% coverage of query (70.9 bits)
TC 3.A.1.1.19 / Q8L126 PalE, component of Platinose (isomaltulose) (6-O-α-D-glucopyranosyl-D-fructofuranose) porter from Agrobacterium tumefaciens (see 3 papers)
palE / BAB96538.1 PalE from Agrobacterium tumefaciens (see 3 papers)
26% identity, 79% coverage of query (55.8 bits)
6lceA / A0A0A1GL90 Crystal structure of beta-l-arabinobiose binding protein - selenomethionine derivative (see paper)
26% identity, 78% coverage of query (55.8 bits)
TC 3.A.1.1.40 / Q9WZR7 Predicted chitobiose porter. Regulated by chitobiose-responsive regulator ChiR from Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099)
24% identity, 73% coverage of query (54.7 bits)
2z8dA / A8W790 The galacto-n-biose-/lacto-n-biose i-binding protein (gl-bp) of the abc transporter from bifidobacterium longum in complex with lacto-n- biose (see paper)
24% identity, 81% coverage of query (53.1 bits)
A8W790 1,3-beta-galactosyl-N-acetylhexosamine phosphorylase (EC 2.4.1.211) from Bifidobacterium longum (see paper)
25% identity, 79% coverage of query (53.1 bits)
2z8fA The galacto-n-biose-/lacto-n-biose i-binding protein (gl-bp) of the abc transporter from bifidobacterium longum in complex with lacto-n- tetraose
24% identity, 81% coverage of query (53.1 bits)
7vfqC / B7GN82 Wild type glta from bifidobacterium infantis jcm 1222 complexed with lacto-n-tetraose
26% identity, 79% coverage of query (52.8 bits)
TC 3.A.1.1.48 / D6ZW64 Extracellular solute-binding protein, family 1, component of The lacto-N-biose I (LNB; Gal β-1,3-GlcNAc)/galacto-N-biose (GNB; Gal β-1,3-GalNAc) transporter from Bifidobacterium longum subsp. longum (strain JDM301)
26% identity, 79% coverage of query (52.4 bits)
AO356_00025 ABC transporter for D-Sorbitol, periplasmic substrate-binding component from Pseudomonas fluorescens FW300-N2C3
22% identity, 72% coverage of query (49.7 bits)
Pf6N2E2_1963 ABC transporter for D-sorbitol, periplasmic substrate-binding component from Pseudomonas fluorescens FW300-N2E2
21% identity, 72% coverage of query (47.8 bits)
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Lawrence Berkeley National Laboratory