Sites on a Tree

 

Searching for up to 100 curated homologs for SMa0247 FitnessBrowser__Smeli:SMa0247 (398 a.a.)

Found high-coverage hits (≥70%) to 4 curated proteins.

Removed hits that are identical to the query, leaving 3

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

HSERO_RS19360 2-keto-3-deoxyxylonate dehydratase (EC 4.2.1.141) from Herbaspirillum seropedicae SmR1
    59% identity, 96% coverage of query (449 bits)

Ga0059261_1895 2-keto-3-deoxyxylonate dehydratase (EC 4.2.1.141) from Sphingomonas koreensis DSMZ 15582
    54% identity, 94% coverage of query (375 bits)

CCNA_00866 2-keto-3-deoxyxylonate dehydratase XylX (EC 4.2.1.141) from Caulobacter crescentus NA1000
xylX / A0A0H3C4T2 2-dehydro-3-deoxy-D-arabinonate dehydratase (EC 4.2.1.141) from Caulobacter vibrioides (strain NA1000 / CB15N) (see 7 papers)
    53% identity, 94% coverage of query (359 bits)

Build an alignment

Build an alignment for SMa0247 and 3 homologs with ≥ 30% identity

Select sequences

Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

Or download the sequences

Change minimum %identity:

No additional hits (below 30% identity) were found

Or start over

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory