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Searching for up to 100 curated homologs for SMa1487 FitnessBrowser__Smeli:SMa1487 (122 a.a.)

Found high-coverage hits (≥70%) to 100 curated proteins.

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

CCNA_01704 lacB: cytochrome c2 component of periplasmic glucoside 3-dehydrogenase (EC 1.1.99.13) from Caulobacter crescentus NA1000
    53% identity, 75% coverage of query (101 bits)

lacB / Q9A7T8 c-type cytochrome protein from Caulobacter vibrioides (strain ATCC 19089 / CB15) (see 2 papers)
    53% identity, 75% coverage of query (101 bits)

3m97X / P54820 Structure of the soluble domain of cytochrome c552 with its flexible linker segment from paracoccus denitrificans (see paper)
    48% identity, 86% coverage of query (96.7 bits)

P19974 Cytochrome c 2.1 from Caenorhabditis elegans
    43% identity, 77% coverage of query (92.4 bits)

CYC1_ASCSU / P92504 Cytochrome c type-1 from Ascaris suum (Pig roundworm) (Ascaris lumbricoides) (see paper)
    41% identity, 77% coverage of query (87.4 bits)

P00076 Cytochrome c from Euglena gracilis
    44% identity, 79% coverage of query (86.7 bits)

P22342 Cytochrome c from Euglena viridis (Cercaria viridis)
    43% identity, 79% coverage of query (84.7 bits)

soxD / O07819 apocytochrome c from Paracoccus denitrificans (see 2 papers)
    42% identity, 76% coverage of query (82.8 bits)

P00077 Cytochrome c; Cytochrome c557 from Strigomonas oncopelti (Parasitic flagellate) (Crithidia oncopelti)
    41% identity, 83% coverage of query (82.4 bits)

P00038 Cytochrome c from Apis mellifera (Honeybee)
    40% identity, 75% coverage of query (81.6 bits)

2yk3A / P00078 Crithidia fasciculata cytochromE C (see paper)
    40% identity, 83% coverage of query (81.3 bits)

P00078 Cytochrome c; Cytochrome c555 from Crithidia fasciculata
    40% identity, 83% coverage of query (81.3 bits)

4dy9A / Q4QEN5 Leishmania major peroxidase is a cytochromE C peroxidase (see paper)
    43% identity, 75% coverage of query (80.9 bits)

4gedB Crystal structure of the leishmania major peroxidase-cytochromE C complex
    43% identity, 75% coverage of query (80.9 bits)

CYC2_DROME / P84029 Cytochrome c-2; Cytochrome c-proximal from Drosophila melanogaster (Fruit fly) (see 2 papers)
    39% identity, 80% coverage of query (80.1 bits)

P00037 Cytochrome c from Samia cynthia (Ailanthus silkmoth) (Phalaena cynthia)
    42% identity, 78% coverage of query (80.1 bits)

P00047 Cytochrome c from Thermomyces lanuginosus (Humicola lanuginosa)
    39% identity, 79% coverage of query (79.7 bits)

P00048 Cytochrome c from Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
    41% identity, 79% coverage of query (79.7 bits)

P00031 Cytochrome c from Macrobrachium malcolmsonii (Monsoon river-prawn) (Palaemon malcolmsonii)
    38% identity, 79% coverage of query (79.7 bits)

1lfmA Crystal structure of cobalt(iii)-substituted cytochromE C (tuna)
    36% identity, 80% coverage of query (79.7 bits)

1i54A CytochromE C (tuna) 2fe:1zn mixed-metal porphyrins
    36% identity, 80% coverage of query (79.7 bits)

P00046 Cytochrome c from Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
    39% identity, 83% coverage of query (79.7 bits)

P00027 Cytochrome c from Squalus suckleyi (Puget Sound dogfish) (Spinax suckleyi)
    38% identity, 79% coverage of query (79.3 bits)

1cycA / P00025 The crystal structure of bonito (katsuo) ferrocytochromE C at 2.3 angstroms resolution. Ii. Structure and function (see paper)
    36% identity, 80% coverage of query (79.0 bits)

P00025 Cytochrome c from Katsuwonus pelamis (Skipjack tuna) (Bonito)
    36% identity, 80% coverage of query (79.0 bits)

P00026 Cytochrome c iso-1/iso-2 from Cyprinus carpio (Common carp)
    37% identity, 80% coverage of query (79.0 bits)

P00022 Cytochrome c from Chelydra serpentina (Snapping turtle) (Testudo serpentina)
    38% identity, 79% coverage of query (78.6 bits)

P00028 Cytochrome c from Entosphenus tridentatus (Pacific lamprey) (Lampetra tridentata)
    38% identity, 79% coverage of query (78.6 bits)

P00032 Cytochrome c from Cornu aspersum (Brown garden snail) (Helix aspersa)
    39% identity, 79% coverage of query (78.2 bits)

2aiuA / P00015 Crystal structure of mouse testicular cytochromE C at 1.6 angstrom (see paper)
    37% identity, 79% coverage of query (77.8 bits)

1akkA / P00004 Solution structure of oxidized horse heart cytochromE C, nmr, minimized average structure (see paper)
    38% identity, 79% coverage of query (77.8 bits)

cy2 / A9CGJ2 cytochrome c2 from Agrobacterium fabrum (strain C58 / ATCC 33970) (see 2 papers)
    38% identity, 99% coverage of query (77.8 bits)

P00015 Cytochrome c, testis-specific from Mus musculus (Mouse)
    37% identity, 79% coverage of query (77.8 bits)

P00043 Cytochrome c from Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 / JCM 1990 / NBRC 0083 / IGC 2968) (Yeast) (Torulaspora hansenii)
    41% identity, 75% coverage of query (77.8 bits)

P00004 Cytochrome c from Equus caballus (Horse)
    38% identity, 79% coverage of query (77.8 bits)

6suvAaA Cytochrome c
    38% identity, 79% coverage of query (77.8 bits)

4rszA The x-ray structure of the primary adduct formed in the reaction between cisplatin and cytochromE C
    38% identity, 79% coverage of query (77.8 bits)

1wejF Igg1 fab fragment (of e8 antibody) complexed with horse cytochromE C at 1.8 a resolution
    38% identity, 79% coverage of query (77.8 bits)

1m60A Solution structure of zinc-substituted cytochromE C
    38% identity, 79% coverage of query (77.8 bits)

1fi7A Solution structure of the imidazole complex of cytochromE C
    38% identity, 79% coverage of query (77.8 bits)

P68519 Cytochrome c from Crotalus viridis viridis (Prairie rattlesnake)
    37% identity, 79% coverage of query (77.8 bits)

P68518 Cytochrome c from Crotalus atrox (Western diamondback rattlesnake)
    37% identity, 79% coverage of query (77.8 bits)

P68517 Cytochrome c from Crotalus adamanteus (Eastern diamondback rattlesnake)
    37% identity, 79% coverage of query (77.8 bits)

P00008 Cytochrome c from Oryctolagus cuniculus (Rabbit)
    38% identity, 79% coverage of query (77.8 bits)

P81280 Cytochrome c from Alligator mississippiensis (American alligator)
    38% identity, 79% coverage of query (77.4 bits)

P00017 Cytochrome c from Aptenodytes patagonicus (King penguin)
    37% identity, 79% coverage of query (77.4 bits)

C554_METTR / D5QVH0 Cytochrome c-554; Cytochrome c class I from Methylosinus trichosporium (see paper)
    41% identity, 81% coverage of query (77.0 bits)

CYC_BOVIN / P62894 Cytochrome c from Bos taurus (Bovine) (see 2 papers)
    38% identity, 79% coverage of query (76.6 bits)

P00020 Cytochrome c from Anas platyrhynchos (Mallard) (Anas boschas)
    37% identity, 79% coverage of query (76.6 bits)

6ff5A X-ray structure of bovine heart cytochromE C at high ionic strength
    38% identity, 79% coverage of query (76.6 bits)

P00049 Cytochrome c from Ustilago sphaerogena (Smut fungus)
    37% identity, 80% coverage of query (76.6 bits)

P00019 Cytochrome c from Struthio camelus (Common ostrich)
    38% identity, 75% coverage of query (76.6 bits)

P67882 Cytochrome c from Meleagris gallopavo (Wild turkey)
    37% identity, 79% coverage of query (76.3 bits)

P67881 Cytochrome c from Gallus gallus (Chicken)
    37% identity, 79% coverage of query (76.3 bits)

P00018 Cytochrome c from Dromaius novaehollandiae (Emu)
    37% identity, 79% coverage of query (76.3 bits)

P00012 Cytochrome c from Mirounga leonina (Southern elephant seal) (Phoca leonina)
    38% identity, 79% coverage of query (75.9 bits)

P00011 Cytochrome c from Canis lupus familiaris (Dog) (Canis familiaris)
    38% identity, 79% coverage of query (75.9 bits)

P21665 Cytochrome c from Varanus varius (Lace monitor lizard) (Lacerta varia)
    37% identity, 79% coverage of query (75.5 bits)

P00007 Cytochrome c from Hippopotamus amphibius (Hippopotamus)
    38% identity, 79% coverage of query (75.5 bits)

P00079 Cytochrome c from Tetrahymena pyriformis
    43% identity, 80% coverage of query (75.5 bits)

P68098 Cytochrome c from Lama guanicoe (Guanaco) (Lama glama guanicoe)
    38% identity, 79% coverage of query (75.1 bits)

P68100 Cytochrome c from Eschrichtius robustus (California gray whale) (Eschrichtius gibbosus)
    38% identity, 79% coverage of query (75.1 bits)

P68099 Cytochrome c from Camelus dromedarius (Dromedary) (Arabian camel)
    38% identity, 79% coverage of query (75.1 bits)

CYC_MOUSE / P62897 Cytochrome c, somatic from Mus musculus (Mouse) (see paper)
    37% identity, 79% coverage of query (74.3 bits)

P00014 Cytochrome c from Macropus giganteus (Eastern gray kangaroo)
    37% identity, 79% coverage of query (74.3 bits)

P62898 Cytochrome c, somatic from Rattus norvegicus (Rat)
    37% identity, 79% coverage of query (74.3 bits)

P00002 Cytochrome c from Macaca mulatta (Rhesus macaque)
    36% identity, 79% coverage of query (74.3 bits)

5c0zB The structure of oxidized rat cytochromE C at 1.13 angstroms resolution
    37% identity, 79% coverage of query (74.3 bits)

CYCS / P99999 cytochrome c from Homo sapiens (see 7 papers)
CYC_HUMAN / P99999 Cytochrome c from Homo sapiens (Human) (see paper)
    36% identity, 79% coverage of query (73.9 bits)

1qn2A / Q7SIA4 Cytochrome ch from methylobacterium extorquens (see paper)
    42% identity, 80% coverage of query (73.9 bits)

P00080 Cytochrome c2 from Rhodopila globiformis (Rhodopseudomonas globiformis)
    41% identity, 76% coverage of query (73.9 bits)

7tlx1 / A0A0E3ELC2 Crystal structure of cytochromE C from pseudomonas putida s16 (see paper)
    41% identity, 75% coverage of query (73.6 bits)

P00069 Cytochrome c from Guizotia abyssinica (Niger) (Ramtilla)
    34% identity, 80% coverage of query (73.2 bits)

CYC1 / GI|1373423 cytochrome c from Candida albicans (see 2 papers)
    37% identity, 75% coverage of query (72.8 bits)

7ljxA Oxidized rat cytochromE C mutant (k53q)
    36% identity, 79% coverage of query (72.4 bits)

P00066 Cytochrome c from Nigella damascena (Love-in-a-mist)
    34% identity, 79% coverage of query (72.4 bits)

5dfsA / P00003 Crystal structure of spider monkey cytochromE C at 1.15 angstrom (see paper)
    35% identity, 79% coverage of query (72.0 bits)

1hroA / P00080 Molecular structure of a high potential cytochrome c2 isolated from rhodopila globiformis (see paper)
    40% identity, 76% coverage of query (72.0 bits)

2n3yA Nmr structure of the y48pcmf variant of human cytochromE C in its reduced state
    35% identity, 79% coverage of query (71.6 bits)

cycA cytochrome c from Emericella nidulans (see 2 papers)
    36% identity, 79% coverage of query (71.2 bits)

P00072 Cytochrome c from Fagopyrum esculentum (Common buckwheat) (Polygonum fagopyrum)
    36% identity, 75% coverage of query (70.9 bits)

AAB09775.1 cytochrome c from Rhodobacter sphaeroides (see paper)
    41% identity, 78% coverage of query (70.1 bits)

CYC23_RHOPL / P86317 Cytochrome c2 from Rhodopseudomonas palustris (see paper)
    35% identity, 79% coverage of query (69.7 bits)

CYC_ALLPO / P00064 Cytochrome c from Allium porrum (Leek) (Allium ampeloprasum var. porrum) (see paper)
    36% identity, 75% coverage of query (69.7 bits)

P00059 Cytochrome c from Abutilon theophrasti (Velvet-leaf) (Sida abutilon)
    35% identity, 80% coverage of query (69.7 bits)

CYC7_YEAST / P00045 Cytochrome c isoform 2; Iso-2-cytochrome c; Cytochrome c hypoxic isoform from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) (see 6 papers)
    34% identity, 77% coverage of query (69.3 bits)

3cxhW / P00045 Structure of yeast complex iii with isoform-2 cytochromE C bound and definition of a minimal core interface for electron transfer. (see paper)
    34% identity, 77% coverage of query (69.3 bits)

1yeaA Structure determination and analysis of yeast iso-2-cytochromE C and a composite mutant protein
    34% identity, 77% coverage of query (69.3 bits)

P00065 Cytochrome c from Arum maculatum (Cuckoo-pint)
    36% identity, 75% coverage of query (69.3 bits)

P00060 Cytochrome c from Solanum lycopersicum (Tomato) (Lycopersicon esculentum)
    36% identity, 75% coverage of query (68.9 bits)

CYC22_RHOTP / P86323 Cytochrome c2 from Rhodoplanes tepidamans (Rhodoplanes cryptolactis) (see paper)
    39% identity, 79% coverage of query (68.6 bits)

CYC2_AFIMA / P86321 Cytochrome c2 from Afifella marina (Rhodobium marinum) (Rhodopseudomonas marina) (see paper)
    38% identity, 77% coverage of query (68.6 bits)

P00041 Cytochrome c from Pichia kudriavzevii (Yeast) (Issatchenkia orientalis)
    34% identity, 77% coverage of query (68.6 bits)

P00070 Cytochrome c from Helianthus annuus (Common sunflower)
    35% identity, 75% coverage of query (68.6 bits)

P62773 Cytochrome c from Brassica oleracea (Wild cabbage)
    34% identity, 75% coverage of query (68.6 bits)

P62772 Cytochrome c from Brassica napus (Rape)
    34% identity, 75% coverage of query (68.6 bits)

P00075 Cytochrome c from Ulva intestinalis (Hollow green nori) (Enteromorpha intestinalis)
    37% identity, 79% coverage of query (68.6 bits)

P00054 Cytochrome c from Sesamum indicum (Oriental sesame) (Sesamum orientale)
    35% identity, 75% coverage of query (68.6 bits)

P00051 Cytochrome c from Cucurbita maxima (Pumpkin) (Winter squash)
    34% identity, 75% coverage of query (68.2 bits)

P81153 Cytochrome c2 iso-1; Cytochrome c552 from Rhodospirillum centenum (Rhodocista centenaria)
    36% identity, 80% coverage of query (68.2 bits)

Build an alignment

Build an alignment for SMa1487 and 100 homologs with ≥ 30% identity

Select sequences

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by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory