Sites on a Tree

 

Searching for up to 100 curated homologs for SMc00500 FitnessBrowser__Smeli:SMc00500 (505 a.a.)

Found high-coverage hits (≥70%) to 5 curated proteins.

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

TC 2.A.80.1.1 / Q9FA44 TctA, component of The tricarboxylate transporter, TctABC from Salmonella enterica (see 2 papers)
    37% identity, 97% coverage of query (317 bits)

HP15_2659 Citrate uptake transporter, large transmembrane component TctA from Marinobacter adhaerens HP15
    37% identity, 98% coverage of query (315 bits)

TC 2.A.80.1.4 / S5Y5N9 Citrate uptake transporter, membrane subunit, component of Pmf-dependent citrate uptake porter, TctABC from Corynebacterium glutamicum MB001
    36% identity, 95% coverage of query (285 bits)

TC 2.A.80.1.2 / S6BBY9 Large transmembrane protein of the aromatic acids transporter, component of Terephthalate (TPA) aromatic acid uptake transport system, TpiBA/TphC from Comamonas sp. E6
    35% identity, 97% coverage of query (281 bits)

Dshi_3121 Tricarboxylate transport membrane protein TctA from Dinoroseobacter shibae DFL-12
    37% identity, 96% coverage of query (262 bits)

Build an alignment

Build an alignment for SMc00500 and 5 homologs with ≥ 30% identity

Select sequences

Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

Or download the sequences

Change minimum %identity:

No additional hits (below 30% identity) were found

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by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory