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Searching for up to 100 curated homologs for SMc01359 FitnessBrowser__Smeli:SMc01359 (550 a.a.)

Found high-coverage hits (≥70%) to 8 curated proteins.

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

5ez3B / Q8YC61 Crystal structure acyl-coa dehydrogenase from brucella melitensis in complex with fad
    66% identity, 97% coverage of query (717 bits)

3u33A / P33224 Crystal structure of the e. Coli adaptive response protein aidb in the space group p3(2) (see paper)
    45% identity, 92% coverage of query (417 bits)

AidB / b4187 putative acyl-CoA dehydrogenase AidB (EC 1.3.8.4) from Escherichia coli K-12 substr. MG1655 (see 6 papers)
AidB / P33224 isovaleryl-CoA dehydrogenase and DNA-binding transcriptional repressor (EC 1.3.8.4) from Escherichia coli (strain K12) (see 13 papers)
AIDB_ECOLI / P33224 Putative acyl-CoA dehydrogenase AidB; EC 1.3.99.- from Escherichia coli (strain K12) (see 4 papers)
    45% identity, 92% coverage of query (417 bits)

4y9jB / Q9XWZ2 Crystal structure of caenorhabditis elegans acdh-11 in complex with c11-coa (see paper)
    31% identity, 78% coverage of query (182 bits)

ACD11_CAEEL / Q9XWZ2 Acyl-CoA dehydrogenase family member 11; EC 1.3.99.- from Caenorhabditis elegans (see paper)
    31% identity, 78% coverage of query (182 bits)

Build an alignment

Build an alignment for SMc01359 and 5 homologs with ≥ 30% identity

Select sequences

Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

Or download the sequences

Change minimum %identity:

Additional hits (identity < 30%)

6sd8X / Q6MJ59 Bd2924 apo-form (see paper)
    28% identity, 85% coverage of query (156 bits)

6sdaB Bd2924 c10 acyl-coenzymea bound form
    28% identity, 85% coverage of query (156 bits)

dmdC / Q5LLW7 3-(methylsulfanyl)propanoyl-CoA dehydrogenase monomer (EC 1.3.99.41) from Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) (see 2 papers)
DMDC_RUEPO / Q5LLW7 3-methylmercaptopropionyl-CoA dehydrogenase; MMPA-CoA dehydrogenase; EC 1.3.99.41 from Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) (Silicibacter pomeroyi) (see paper)
    26% identity, 71% coverage of query (108 bits)

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by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory