Sites on a Tree

 

Searching for up to 100 curated homologs for SMc02253 FitnessBrowser__Smeli:SMc02253 (101 a.a.)

Found high-coverage hits (≥70%) to 4 curated proteins.

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

pchB / Q51507 isochorismate pyruvate lyase (EC 4.2.99.21) from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) (see paper)
PCHB_PSEAE / Q51507 Isochorismate pyruvate lyase; IPL; Chorismate mutase; CM; Salicylate biosynthesis protein; EC 4.2.99.21; EC 5.4.99.5 from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) (see 6 papers)
Q51507 isochorismate lyase (EC 4.2.99.21) from Pseudomonas aeruginosa (see 3 papers)
    38% identity, 91% coverage of query (50.8 bits)

2h9dD / Q51507 Pyruvate-bound structure of the isochorismate-pyruvate lyase from pseudomonas aerugionsa (see paper)
    38% identity, 91% coverage of query (50.8 bits)

2h9cA Native crystal structure of the isochorismate-pyruvate lyase from pseudomonas aeruginosa
    35% identity, 91% coverage of query (48.1 bits)

2h9dA / Q51507 Pyruvate-bound structure of the isochorismate-pyruvate lyase from pseudomonas aerugionsa (see paper)
    34% identity, 91% coverage of query (47.4 bits)

Build an alignment

Build an alignment for SMc02253 and 4 homologs with ≥ 30% identity

Select sequences

Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

Or download the sequences

Change minimum %identity:

No additional hits (below 30% identity) were found

Or start over

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory