Searching for up to 100 curated homologs for SMc03163 FitnessBrowser__Smeli:SMc03163 (436 a.a.)

Found high-coverage hits (≥70%) to 36 curated proteins.

Removed hits that are identical to the query, leaving 35

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

PGA1_c14000 Xylose isomerase (EC 5.3.1.5) from Phaeobacter inhibens BS107
    71% identity, 100% coverage of query (657 bits)

BWI76_RS27025 Xylose isomerase (EC 5.3.1.5) from Klebsiella michiganensis M5al
    63% identity, 99% coverage of query (580 bits)

XylA / b3565 xylose isomerase (EC 5.3.1.5) from Escherichia coli K-12 substr. MG1655 (see 38 papers)
xylA / P00944 xylose isomerase (EC 5.3.1.5) from Escherichia coli (strain K12) (see 36 papers)
XYLA_ECOLI / P00944 Xylose isomerase; D-xylulose keto-isomerase; EC 5.3.1.5 from Escherichia coli (strain K12) (see 2 papers)
xylA / GB|AAC76589.1 xylose isomerase; EC 5.3.1.5 from Escherichia coli K12 (see 2 papers)
    62% identity, 99% coverage of query (572 bits)

C7G532 xylose isomerase (EC 5.3.1.5) from Vibrio sp. (see paper)
    63% identity, 100% coverage of query (572 bits)

BPHYT_RS32825 Xylose isomerase (EC 5.3.1.5) from Burkholderia phytofirmans PsJN
    61% identity, 99% coverage of query (563 bits)

PS417_10945 Xylose isomerase (EC 5.3.1.5) from Pseudomonas simiae WCS417
    61% identity, 99% coverage of query (543 bits)

AO356_28500 Xylose isomerase (EC 5.3.1.5) from Pseudomonas fluorescens FW300-N2C3
    62% identity, 99% coverage of query (535 bits)

D2DK62 xylose isomerase (EC 5.3.1.5) from Thermoanaerobacter ethanolicus (see paper)
    52% identity, 99% coverage of query (476 bits)

1a0cA / P19148 Xylose isomerase from thermoanaerobacterium thermosulfurigenes
    51% identity, 99% coverage of query (469 bits)

xylA / AAB06798.1 xylose isomerase from Thermotoga neapolitana (see paper)
    52% identity, 99% coverage of query (467 bits)

1a0eA / P45687 Xylose isomerase from thermotoga neapolitana
    52% identity, 99% coverage of query (467 bits)

D9SR73 xylose isomerase (EC 5.3.1.5) from Clostridium cellulovorans (see paper)
    51% identity, 99% coverage of query (464 bits)

XYLA_THESA / P30435 Xylose isomerase; EC 5.3.1.5 from Thermoanaerobacterium saccharolyticum (see paper)
AAA03088.1 xylose isomerase from Thermoanaerobacterium saccharolyticum (see paper)
    51% identity, 99% coverage of query (464 bits)

Echvi_1876 Xylose isomerase (EC 5.3.1.5) from Echinicola vietnamensis KMM 6221, DSM 17526
    52% identity, 100% coverage of query (462 bits)

xylA / AAC44473.1 xylose isomerase from Thermoanaerobacterium sp (see paper)
    50% identity, 99% coverage of query (459 bits)

Q9P8C9 xylose isomerase (EC 5.3.1.5) from Piromyces sp. E2 (see paper)
    52% identity, 100% coverage of query (458 bits)

5nh4A / Q9P8C9 Crystal structure of xylose isomerase from piromyces e2 in complex with one mg2+ ions and glycerol (see paper)
    52% identity, 99% coverage of query (457 bits)

5yn3A Crystal structure of xylose isomerase from piromyces sp. E2
    52% identity, 99% coverage of query (457 bits)

5nhcA Crystal structure of xylose isomerase from piromyces e2 in complex with two co2+ ions and xylulose
    52% identity, 99% coverage of query (457 bits)

5nhaA Crystal structure of xylose isomerase from piromyces sp. E2 in complex with two mn2+ ions and sorbitol
    52% identity, 99% coverage of query (457 bits)

5nh9A Crystal structure of xylose isomerase from piromyces e2 in complex with two mn2+ ions and xylose
    52% identity, 99% coverage of query (457 bits)

5nh7A Crystal structure of xylose isomerase from piromyces e2 in complex with two mg2+ ions and xylose
    52% identity, 99% coverage of query (457 bits)

5nh6A Crystal structure of xylose isomerase from piromyces e2 complexed with one mg2+ ion and xylitol
    52% identity, 99% coverage of query (457 bits)

5nh5A Crystal structure of native xylose isomerase from piromyces e2
    52% identity, 99% coverage of query (457 bits)

Q8A9M2 xylose isomerase (EC 5.3.1.5) from Bacteroides thetaiotaomicron (see paper)
    54% identity, 99% coverage of query (451 bits)

4xkmA / Q8A9M2 Crystal structure of xylose isomerase from an human intestinal tract microbe bacteroides thetaiotaomicron
    54% identity, 99% coverage of query (451 bits)

xylA / AAA99461.1 xylose isomerase from Bacillus sp. (see paper)
    52% identity, 99% coverage of query (447 bits)

1a0dA / P54273 Xylose isomerase from bacillus stearothermophilus
    52% identity, 99% coverage of query (446 bits)

B7SLY1 xylose isomerase (EC 5.3.1.5) from Orpinomyces sp. (see 2 papers)
    50% identity, 100% coverage of query (439 bits)

xylA / G2TH70 xylA (EC 5.3.1.5) from Weizmannia coagulans 36D1 (see paper)
    49% identity, 99% coverage of query (416 bits)

6intA / A0A4V8H014 Xylose isomerase from paenibacillus sp. R4 (see paper)
    48% identity, 99% coverage of query (412 bits)

XYLA_LEVBR / P29443 Xylose isomerase; EC 5.3.1.5 from Levilactobacillus brevis (Lactobacillus brevis) (see paper)
    43% identity, 100% coverage of query (384 bits)

A1A0H0 xylose isomerase (EC 5.3.1.5) from Bifidobacterium adolescentis (see paper)
    44% identity, 98% coverage of query (368 bits)

Build an alignment

Build an alignment for SMc03163 and 33 homologs with ≥ 30% identity

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Additional hits (identity < 30%)

P26997 xylose isomerase (EC 5.3.1.5) from Thermus thermophilus (see paper)
    29% identity, 89% coverage of query (104 bits)

6n98A / A0A1K2FZ20 Xylose isomerase 1f1 variant from streptomyces sp. F-1 (see paper)
    28% identity, 72% coverage of query (82.8 bits)

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