Searching for up to 100 curated homologs for SMc04259 FitnessBrowser__Smeli:SMc04259 (411 a.a.)

Found high-coverage hits (≥70%) to 14 curated proteins.

Removed hits that are identical to the query, leaving 13

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

Ac3H11_2062 glucose ABC transporter, substrate-binding component from Acidovorax sp. GW101-3H11
    39% identity, 82% coverage of query (230 bits)

5dviA / H7BRJ8 High resolution crystal structure of glucose complexed periplasmic glucose binding protein (ppgbp) from p. Putida csv86 (see paper)
    36% identity, 94% coverage of query (220 bits)

5dvjA Crystal structure of galactose complexed periplasmic glucose binding protein (ppgbp) from p. Putida csv86
    36% identity, 94% coverage of query (220 bits)

4r2bA / A6X5L9 Crystal structure of sugar transporter oant_3817 from ochrobactrum anthropi, target efi-510528, with bound glucose
    38% identity, 81% coverage of query (219 bits)

8hqqA / Q4FMK2 Crystal structure of the glucose-binding protein sar11_0769 from "candidatus pelagibacter ubique" htcc1062 bound to glucose
    37% identity, 80% coverage of query (207 bits)

PfGW456L13_1894 ABC transporter for D-Galactose and D-Glucose, periplasmic substrate-binding component from Pseudomonas fluorescens GW456-L13
    37% identity, 86% coverage of query (206 bits)

TC 3.A.1.1.30 / Q88P38 GtsA (GLcE), component of Glucose porter, GtsABCD from Pseudomonas putida (strain KT2440) (see paper)
    36% identity, 87% coverage of query (194 bits)

PS417_22145 glucose/xylose ABC transporter, periplasmic substrate-binding component from Pseudomonas simiae WCS417
    36% identity, 84% coverage of query (189 bits)

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Build an alignment for SMc04259 and 8 homologs with ≥ 30% identity

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Additional hits (identity < 30%)

TC 3.A.1.1.24 / Q72KX2 Glucose-binding protein aka TT_C0328, component of The glucose/mannose porter TTC0326-8 plus MalK1 (ABC protein, shared with 3.A.1.1.25) from Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) (see paper)
    29% identity, 80% coverage of query (120 bits)

2b3bA / Q72KX2 Thermus thermophilus glucose/galactose binding protein with bound glucose (see paper)
    29% identity, 79% coverage of query (114 bits)

2b3fA Thermus thermophilus glucose/galactose binding protein bound with galactose
    29% identity, 79% coverage of query (114 bits)

2b3bC Thermus thermophilus glucose/galactose binding protein with bound glucose
    29% identity, 79% coverage of query (114 bits)

XACG_HALVD / D4GP35 Xylose/arabinose-binding protein XacG from Haloferax volcanii (strain ATCC 29605 / DSM 3757 / JCM 8879 / NBRC 14742 / NCIMB 2012 / VKM B-1768 / DS2) (Halobacterium volcanii) (see paper)
    24% identity, 80% coverage of query (71.2 bits)

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