Sites on a Tree

 

Searching for up to 100 curated homologs for SMc04347 FitnessBrowser__Smeli:SMc04347 (683 a.a.)

Found high-coverage hits (≥70%) to 5 curated proteins.

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

PGA1_c15200 ATP-dependent reduction of co(II)balamin (RamA-like) (EC:2.1.1.13) from Phaeobacter inhibens BS107
    57% identity, 96% coverage of query (766 bits)

3zyyX / Q3ACS2 Reductive activator for corrinoid,iron-sulfur protein (see paper)
    31% identity, 94% coverage of query (316 bits)

4c1nI Corrinoid protein reactivation complex with activator
    32% identity, 75% coverage of query (280 bits)

Build an alignment

Build an alignment for SMc04347 and 3 homologs with ≥ 30% identity

Select sequences

Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

Or download the sequences

Change minimum %identity:

Additional hits (identity < 30%)

B8R2M5 [Co(II) methylated amine-specific corrinoid protein] reductase (EC 1.16.99.1) from Acetobacterium dehalogenans (see paper)
    28% identity, 92% coverage of query (249 bits)

RAMQ_EUBLI / P0DX10 Corrinoid activation enzyme RamQ from Eubacterium limosum (see 2 papers)
    29% identity, 89% coverage of query (248 bits)

Or start over

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory