Searching for up to 100 curated homologs for SMc04383 FitnessBrowser__Smeli:SMc04383 (466 a.a.)
Found high-coverage hits (≥70%) to 8 curated proteins.
Removed hits that are identical to the query, leaving 7
You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.
PP_5260 2-oxoadipate decarboxylase/hydroxylase (2-hydroxyglutarate synthase) from Pseudomonas putida KT2440
ydcJ / Q88CC1 2-oxoadipate dioxygenase/decarboxylase (EC 1.13.11.93) from Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440) (see 2 papers)
HGLS_PSEPK / Q88CC1 2-oxoadipate dioxygenase/decarboxylase; 2-hydroxyglutarate synthase; EC 1.13.11.93 from Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440) (see 2 papers)
60% identity, 99% coverage of query (539 bits)
6w1hA / Q88CC1 Crystal structure of the hydroxyglutarate synthase in complex with 2- oxoadipate from pseudomonas putida (see paper)
59% identity, 98% coverage of query (524 bits)
AO356_01105 putative hydrolase, required for lysine catabolism from Pseudomonas fluorescens FW300-N2C3
58% identity, 98% coverage of query (517 bits)
YdcJ / b1423 DUF1338 domain-containing protein YdcJ from Escherichia coli K-12 substr. MG1655 (see paper)
HGLS_ECOLI / P76097 2-oxoadipate dioxygenase/decarboxylase; 2-hydroxyglutarate synthase; EC 1.13.11.93 from Escherichia coli (strain K12) (see paper)
56% identity, 96% coverage of query (487 bits)
2rjbA / A0A0H2UZX2 Crystal structure of uncharacterized protein ydcj (sf1787) from shigella flexneri which includes domain duf1338. Northeast structural genomics consortium target sfr276
53% identity, 96% coverage of query (449 bits)
2rjbC Crystal structure of uncharacterized protein ydcj (sf1787) from shigella flexneri which includes domain duf1338. Northeast structural genomics consortium target sfr276
49% identity, 96% coverage of query (409 bits)
2rjbD / A0A0H2UZX2 Crystal structure of uncharacterized protein ydcj (sf1787) from shigella flexneri which includes domain duf1338. Northeast structural genomics consortium target sfr276
53% identity, 89% coverage of query (407 bits)
Build an alignment for SMc04383 and 7 homologs with ≥ 30% identity
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Lawrence Berkeley National Laboratory