Searching for up to 100 curated homologs for SMc04384 FitnessBrowser__Smeli:SMc04384 (473 a.a.)
Found high-coverage hits (≥70%) to 46 curated proteins.
Removed hits that are identical to the query, leaving 45
You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.
D2HDH_RAT / P84850 D-2-hydroxyglutarate dehydrogenase, mitochondrial; EC 1.1.99.39 from Rattus norvegicus (Rat) (see paper)
34% identity, 94% coverage of query (209 bits)
6lpnB / Q8N465 Crystal structure of human d-2-hydroxyglutarate dehydrogenase in apo form (see paper)
35% identity, 95% coverage of query (204 bits)
6lpxA Crystal structure of human d-2-hydroxyglutarate dehydrogenase in complex with 2-oxoglutarate (2-og)
35% identity, 95% coverage of query (204 bits)
6lpuA Crystal structure of human d-2-hydroxyglutarate dehydrogenase in complex with l-2-hydroxyglutarate (l-2-hg)
35% identity, 95% coverage of query (204 bits)
6lpqA Crystal structure of human d-2-hydroxyglutarate dehydrogenase in complex with d-malate (d-mal)
35% identity, 95% coverage of query (204 bits)
6lppA Crystal structure of human d-2-hydroxyglutarate dehydrogenase in complex with d-2-hydroxyglutarate (d-2-hg)
35% identity, 95% coverage of query (204 bits)
D2HDH_ARATH / O23240 D-2-hydroxyglutarate dehydrogenase, mitochondrial; AtD-2HGDH; EC 1.1.99.39 from Arabidopsis thaliana (Mouse-ear cress) (see 3 papers)
30% identity, 99% coverage of query (203 bits)
D2HGDH / Q8N465 D-2-hydroxyglutarate dehydrogenase, mitochondrial (EC 1.1.99.39) from Homo sapiens (see paper)
D2HDH_HUMAN / Q8N465 D-2-hydroxyglutarate dehydrogenase, mitochondrial; EC 1.1.99.39 from Homo sapiens (Human) (see 7 papers)
Q8N465 D-2-hydroxyglutarate dehydrogenase (EC 1.1.99.39) from Homo sapiens (see 3 papers)
35% identity, 95% coverage of query (202 bits)
3pm9A / Q6NAV4 Crystal structure of a putative dehydrogenase (rpa1076) from rhodopseudomonas palustris cga009 at 2.57 a resolution
34% identity, 97% coverage of query (200 bits)
D2HDH_STUS1 / A4VGK4 D-2-hydroxyglutarate dehydrogenase; D-2-HG dehydrogenase; D2HGDH; D-malate dehydrogenase; EC 1.1.99.39; EC 1.1.99.- from Stutzerimonas stutzeri (strain A1501) (Pseudomonas stutzeri) (see 2 papers)
31% identity, 99% coverage of query (194 bits)
DLD2_YEAST / P46681 D-2-hydroxyglutarate--pyruvate transhydrogenase DLD2; D-2HG--pyruvate transhydrogenase DLD2; Actin-interacting protein 2; D-lactate dehydrogenase [cytochrome] 2, mitochondrial; D-lactate ferricytochrome C oxidoreductase; D-LCR; EC 1.1.99.40; EC 1.1.2.4 from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) (see 4 papers)
32% identity, 94% coverage of query (193 bits)
Build an alignment for SMc04384 and 11 homologs with ≥ 30% identity
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Q9I6H4 D-2-hydroxyglutarate dehydrogenase (EC 1.1.99.39) from Pseudomonas aeruginosa (see paper)
29% identity, 98% coverage of query (182 bits)
YN53_SCHPO / Q9C1X2 Putative D-lactate dehydrogenase C713.03, mitochondrial; EC 1.1.2.4 from Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast) (see paper)
31% identity, 91% coverage of query (179 bits)
DLD3_YEAST / P39976 D-2-hydroxyglutarate--pyruvate transhydrogenase DLD3; D-2HG--pyruvate transhydrogenase DLD3; (R)-2-hydroxyglutarate--pyruvate transhydrogenase; D-lactate dehydrogenase [cytochrome] 3; D-lactate ferricytochrome C oxidoreductase; D-LCR; EC 1.1.99.40; EC 1.1.2.4 from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) (see 3 papers)
P39976 (R)-2-hydroxyglutarate-pyruvate transhydrogenase (EC 1.1.99.40) from Saccharomyces cerevisiae (see paper)
30% identity, 85% coverage of query (176 bits)
D2HDH_XANCL / P0DV35 D-2-hydroxyglutarate dehydrogenase; D2HGDH; EC 1.1.99.39 from Xanthomonas citri pv. viticola (strain LMG 965 / NCPPB 2475 / ICMP 3867 / CFBP 7660) (Xanthomonas campestris pv. viticola) (see paper)
30% identity, 90% coverage of query (161 bits)
7qh2C / H6LBS1 Cryo-em structure of ldh-etfab complex from acetobacterium woodii (see paper)
31% identity, 90% coverage of query (140 bits)
lctD / H6LBS1 lactate dehydrogenase (EC 1.1.1.436) from Acetobacterium woodii (strain ATCC 29683 / DSM 1030 / JCM 2381 / KCTC 1655 / WB1) (see 2 papers)
LCTD_ACEWD / H6LBS1 Lactate dehydrogenase (NAD(+),ferredoxin) subunit LctD; EC 1.1.1.436 from Acetobacterium woodii (strain ATCC 29683 / DSM 1030 / JCM 2381 / KCTC 1655 / WB1) (see paper)
H6LBS1 lactate dehydrogenase (NAD+, ferredoxin) (subunit 1/3) (EC 1.3.1.110) from Acetobacterium woodii (see paper)
31% identity, 90% coverage of query (140 bits)
Rv0161 / O07406 trans-delta20-39-hydroxy-40-methyl-C60:1-[acp] oxidoreductase from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) (see paper)
28% identity, 87% coverage of query (135 bits)
DLD_ANAHA / D4MUV9 D-lactate dehydrogenase; EC 1.1.99.6 from Anaerostipes hadrus (see paper)
27% identity, 86% coverage of query (124 bits)
DLD / Q94AX4 D-lactate dehydrogenase (cytochrome c) monomer (EC 1.1.2.4) from Arabidopsis thaliana (see 2 papers)
DLD_ARATH / Q94AX4 D-lactate dehydrogenase [cytochrome], mitochondrial; AtD-LDH; D-lactate ferricytochrome C oxidoreductase; Glycolate dehydrogenase; EC 1.1.2.4 from Arabidopsis thaliana (Mouse-ear cress) (see 2 papers)
26% identity, 90% coverage of query (119 bits)
E6N788 (S)-2-hydroxy-acid oxidase (EC 1.1.3.15); D-lactate dehydrogenase (acceptor) (EC 1.1.99.6) from Candidatus Caldarchaeum subterraneum (see paper)
27% identity, 91% coverage of query (118 bits)
LDHD_DANRE / F1QXM5 Probable D-lactate dehydrogenase, mitochondrial; DLD; Lactate dehydrogenase D; EC 1.1.2.4 from Danio rerio (Zebrafish) (Brachydanio rerio) (see paper)
26% identity, 98% coverage of query (111 bits)
DLD_ARCFU / O29853 D-lactate dehydrogenase; EC 1.1.99.6 from Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16) (see 2 papers)
O29853 D-lactate dehydrogenase (acceptor) (EC 1.1.99.6) from Archaeoglobus fulgidus (see 2 papers)
26% identity, 90% coverage of query (106 bits)
A0A0G2K1W9 D-lactate dehydrogenase (EC 1.1.1.28) from Rattus norvegicus (see paper)
26% identity, 99% coverage of query (106 bits)
8jdeA Crystal structure of mldhd in complex with d-lactate
26% identity, 99% coverage of query (105 bits)
G4MWZ3 D-lactate dehydrogenase (EC 1.1.1.28) from Pyricularia oryzae (see paper)
25% identity, 96% coverage of query (103 bits)
W1QLN6 D-lactate dehydrogenase (cytochrome) (EC 1.1.2.4) from Ogataea angusta (see 2 papers)
25% identity, 84% coverage of query (103 bits)
8jdvA Crystal structure of mldhd in complex with 2-ketohexanoic acid
26% identity, 99% coverage of query (103 bits)
8jdxA Crystal structure of mldhd in complex with 2-ketoisovaleric acid
25% identity, 99% coverage of query (103 bits)
8jdtA Crystal structure of mldhd in complex with 2-ketobutanoic acid
26% identity, 99% coverage of query (103 bits)
8jdsA Crystal structure of mldhd in complex with pyruvate
26% identity, 99% coverage of query (103 bits)
LDHD_MOUSE / Q7TNG8 Probable D-lactate dehydrogenase, mitochondrial; DLD; Lactate dehydrogenase D; EC 1.1.2.4 from Mus musculus (Mouse) (see paper)
26% identity, 99% coverage of query (102 bits)
8jdzA Crystal structure of mldhd in complex with 2-keto-3-methylvaleric acid
25% identity, 99% coverage of query (102 bits)
8jdyA Crystal structure of mldhd in complex with 2-ketoisocaproic acid
25% identity, 99% coverage of query (102 bits)
8jduA Crystal structure of mldhd in complex with 2-ketovaleric acid
25% identity, 99% coverage of query (102 bits)
LDHD / Q86WU2 mitochondrial D-lactate dehydrogenase (EC 1.1.2.4) from Homo sapiens (see 3 papers)
LDHD_HUMAN / Q86WU2 Probable D-lactate dehydrogenase, mitochondrial; DLD; Lactate dehydrogenase D; EC 1.1.2.4 from Homo sapiens (Human) (see 3 papers)
Q86WU2 D-lactate dehydrogenase (cytochrome) (EC 1.1.2.4) from Homo sapiens (see paper)
26% identity, 90% coverage of query (100 bits)
8jdbA / Q7TNG8 Crystal structure of h405a mldhd in complex with d-2-hydroxyoctanoic acid (see paper)
26% identity, 99% coverage of query (99.4 bits)
8jdrA Crystal structure of h405a mldhd in complex with d-2-hydroxy-3-methyl- valeric acid
26% identity, 99% coverage of query (99.4 bits)
8jdqA Crystal structure of h405a mldhd in complex with d-2-hydroxyisocaproic acid
26% identity, 99% coverage of query (99.4 bits)
8jdoA Crystal structure of h405a mldhd in complex with d-2-hydroxyhexanoic acid
26% identity, 99% coverage of query (99.4 bits)
8jdnA Crystal structure of h405a mldhd in complex with d-2-hydroxyvaleric acid
26% identity, 99% coverage of query (99.4 bits)
8jdgA Crystal structure of h405a mldhd in complex with d-2-hydroxybutanoic acid
26% identity, 99% coverage of query (99.4 bits)
PGA1_c29720 D-lactate dehydrogenase, FAD-linked subunit GlcD (EC 1.1.99.6) from Phaeobacter inhibens BS107
26% identity, 92% coverage of query (97.4 bits)
Q974L0 D-lactate dehydrogenase (acceptor) (EC 1.1.99.6) from Sulfurisphaera tokodaii (see paper)
25% identity, 90% coverage of query (95.5 bits)
G4RPF4 D-lactate dehydrogenase (acceptor) (EC 1.1.99.6) from Thermoproteus tenax (see paper)
27% identity, 83% coverage of query (79.3 bits)
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Lawrence Berkeley National Laboratory