Searching for up to 100 curated homologs for SMc04396 FitnessBrowser__Smeli:SMc04396 (414 a.a.)

Found high-coverage hits (≥70%) to 20 curated proteins.

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

4r2bA / A6X5L9 Crystal structure of sugar transporter oant_3817 from ochrobactrum anthropi, target efi-510528, with bound glucose
    86% identity, 94% coverage of query (709 bits)

5dviA / H7BRJ8 High resolution crystal structure of glucose complexed periplasmic glucose binding protein (ppgbp) from p. Putida csv86 (see paper)
    50% identity, 94% coverage of query (368 bits)

5dvjA Crystal structure of galactose complexed periplasmic glucose binding protein (ppgbp) from p. Putida csv86
    50% identity, 94% coverage of query (368 bits)

Ac3H11_2062 glucose ABC transporter, substrate-binding component from Acidovorax sp. GW101-3H11
    49% identity, 90% coverage of query (363 bits)

8hqqA / Q4FMK2 Crystal structure of the glucose-binding protein sar11_0769 from "candidatus pelagibacter ubique" htcc1062 bound to glucose
    48% identity, 92% coverage of query (362 bits)

PfGW456L13_1894 ABC transporter for D-Galactose and D-Glucose, periplasmic substrate-binding component from Pseudomonas fluorescens GW456-L13
    45% identity, 99% coverage of query (354 bits)

PS417_22145 glucose/xylose ABC transporter, periplasmic substrate-binding component from Pseudomonas simiae WCS417
    45% identity, 100% coverage of query (328 bits)

TC 3.A.1.1.30 / Q88P38 GtsA (GLcE), component of Glucose porter, GtsABCD from Pseudomonas putida (strain KT2440) (see paper)
    48% identity, 92% coverage of query (318 bits)

SMc04259 ABC transporter for D-Cellobiose and D-Salicin, periplasmic substrate-binding protein from Sinorhizobium meliloti 1021
    37% identity, 83% coverage of query (206 bits)

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Build an alignment for SMc04396 and 9 homologs with ≥ 30% identity

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Additional hits (identity < 30%)

TC 3.A.1.1.24 / Q72KX2 Glucose-binding protein aka TT_C0328, component of The glucose/mannose porter TTC0326-8 plus MalK1 (ABC protein, shared with 3.A.1.1.25) from Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) (see paper)
    28% identity, 91% coverage of query (152 bits)

2b3bA / Q72KX2 Thermus thermophilus glucose/galactose binding protein with bound glucose (see paper)
    28% identity, 85% coverage of query (142 bits)

2b3fA Thermus thermophilus glucose/galactose binding protein bound with galactose
    28% identity, 85% coverage of query (142 bits)

2b3bC Thermus thermophilus glucose/galactose binding protein with bound glucose
    28% identity, 85% coverage of query (142 bits)

XACG_HALVD / D4GP35 Xylose/arabinose-binding protein XacG from Haloferax volcanii (strain ATCC 29605 / DSM 3757 / JCM 8879 / NBRC 14742 / NCIMB 2012 / VKM B-1768 / DS2) (Halobacterium volcanii) (see paper)
    24% identity, 93% coverage of query (72.8 bits)

TC 3.A.1.1.21 / Q9L027 BxlE, component of The xylobiose porter; BxlEFG(K) from Streptomyces coelicolor (see paper)
    23% identity, 83% coverage of query (60.1 bits)

TC 3.A.1.1.50 / Q5SLB4 Sugar ABC transporter, periplasmic sugar-binding protein, component of Probable glycerophosphocholine (GPC) uptake porter (Chandravanshi et al. 2016). The system may include a receptor and three membrane proteins (of 378 aas and 6 TMSs, 299 aas and 7 TMSs, and 113 aas and 3 TMSs (?). The ATPase has not been identified from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
    25% identity, 77% coverage of query (57.0 bits)

7c0kB / Q5SLB4 Crystal structure of a dinucleotide-binding protein of abc transporter endogenously bound to uridylyl-3'-5'-phospho-guanosine (form ii) (see paper)
    25% identity, 77% coverage of query (57.0 bits)

7c0oB Crystal structure of a dinucleotide-binding protein (y56f) of abc transporter endogenously bound to uridylyl-3'-5'-phospho-guanosine
    25% identity, 77% coverage of query (57.0 bits)

7c0kA Crystal structure of a dinucleotide-binding protein of abc transporter endogenously bound to uridylyl-3'-5'-phospho-guanosine (form ii)
    25% identity, 77% coverage of query (56.6 bits)

GLCS_SACS2 / Q97UZ1 Glucose-binding protein GlcS; GBP from Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) (Sulfolobus solfataricus) (see 2 papers)
TC 3.A.1.1.13 / Q97UZ1 GlcS, component of Glucose, mannose, galactose porter from Sulfolobus solfataricus (see paper)
    20% identity, 72% coverage of query (54.7 bits)

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